AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
August 22, 2009 02:12PM
If your current version doesn't read NIFTI, you can probably still do all this with a generic binary format. Amira can read in the BRIK file as a binary image. Write out the binary data (even the .img file from the Analyze file should work) and convert it back to AFNI format with to3d -geomparent, using the original dataset as the geometry parent dataset. Other options are to use AFNI's Draw Dataset to draw the ROIs or another program that works with NIFTI format, like MIPAV.
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Subject Author Posted

Alignment issues with imported ROImask

Kristen August 20, 2009 09:59PM

Re: Alignment issues with imported ROImask

rick reynolds August 21, 2009 10:54AM

Re: Alignment issues with imported ROImask

Kristen August 21, 2009 03:22PM

Re: Alignment issues with imported ROImask

Daniel Glen August 22, 2009 02:12PM