AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Virendra
August 23, 2009 05:29PM
Dear All,

I am trying to align my skull stripped anatomical image to the functional image using 3DAllineate. But everytime I run the script, it gives me this error without the use of -usetemp :

3dAllineate(91635) malloc: *** mmap(size=25952256) failed (error code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug

Fatal Signal 10 (SIGBUS) received
Last STATUS: storing to shorts
EDIT_substscale_brick
3dAllineate
Bottom of Debug Stack
** AFNI version = AFNI_2008_02_01_1144 Compile date = Feb 5 2008
** Program Abort **

My base image is anat image and input image is the functional image. I tried running the same script using -usetemp and it gave me the error:


3dAllineate(82160) malloc: *** mmap(size=25952256) failed (error code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug
** ERROR: mri_unpurge: Can't malloc() 25952256 bytes


Can anybody suggest me a way to do this or an alternative to this?

Thank You,

Virendra
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Subject Author Posted

3dAllineate memory error

Virendra August 23, 2009 05:29PM

Re: 3dAllineate memory error

bob cox August 25, 2009 10:29AM