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August 23, 2009 05:29PM
Dear All,

I am trying to align my skull stripped anatomical image to the functional image using 3DAllineate. But everytime I run the script, it gives me this error without the use of -usetemp :

3dAllineate(91635) malloc: *** mmap(size=25952256) failed (error code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug

Fatal Signal 10 (SIGBUS) received
Last STATUS: storing to shorts
EDIT_substscale_brick
3dAllineate
Bottom of Debug Stack
** AFNI version = AFNI_2008_02_01_1144 Compile date = Feb 5 2008
** Program Abort **

My base image is anat image and input image is the functional image. I tried running the same script using -usetemp and it gave me the error:


3dAllineate(82160) malloc: *** mmap(size=25952256) failed (error code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug
** ERROR: mri_unpurge: Can't malloc() 25952256 bytes


Can anybody suggest me a way to do this or an alternative to this?

Thank You,

Virendra
Subject Author Posted

3dAllineate memory error

Virendra August 23, 2009 05:29PM

Re: 3dAllineate memory error

bob cox August 25, 2009 10:29AM