Hi Rick,

When we try to run the new script, it gives us an error and says the matrix should be 1 x 35.

Here is the script, if this helps:

3dDeconvolve \
-input 3dalldata.n+orig \
-concat ../../files/runs.1D \
-nfirst 0 \
-num_stimts 17 \
-num_glt 11 \
-stim_file 1 behavior/cue_safe.1D -stim_label 1 'cue_safe' \
-stim_file 2 behavior/cue_risk.1D -stim_label 2 'cue_risk' \
-stim_file 3 behavior/ch_safe.1D -stim_label 3 'ch_safe' \
-stim_file 4 behavior/ch_risk.1D -stim_label 4 'ch_risk' \
-stim_file 5 behavior/ant_safe.1D -stim_label 5 'ant_safe' \
-stim_file 6 behavior/ant_risk.1D -stim_label 6 'ant_risk' \
-stim_file 7 behavior/fbk_safe.1D -stim_label 7 'fbk_safe' \
-stim_file 8 behavior/fbk_win1.1D -stim_label 8 'fbk_win1' \
-stim_file 9 behavior/fbk_win5.1D -stim_label 9 'fbk_win5' \
-stim_file 10 behavior/fbk_lose1.1D -stim_label 10 'fbk_lose1' \
-stim_file 11 behavior/fbk_lose5.1D -stim_label 11 'fbk_lose5'\
-stim_file 12 3dmotion.motion.1D'[1]' -stim_label 12 'roll' \
-stim_file 13 3dmotion.motion.1D'[2]' -stim_label 13 'pitch' \
-stim_file 14 3dmotion.motion.1D'[3]' -stim_label 14 'yaw' \
-stim_file 15 3dmotion.motion.1D'[4]' -stim_label 15 'dS' \
-stim_file 16 3dmotion.motion.1D'[5]' -stim_label 16 'dL' \
-stim_file 17 3dmotion.motion.1D'[6]' -stim_label 17 'dP' \
-full_first \
-polort 5 \
-tout \
-bucket regression2a \
-glt 1 ../../files/CSvCR2.mat -glt_label 1 'CRvCS' \
-glt 1 ../../files/CvAll2.mat -glt_label 2 'CvAll' \
-glt 1 ../../files/ChSvChR2.mat -glt_label 3 'ChRvChS' \
-glt 1 ../../files/ChvAll2.mat -glt_label 4 'ChvAll' \
-glt 1 ../../files/ChASvChAR2.mat -glt_label 5 'ChARvChAS' \
-glt 1 ../../files/ASvAR2.mat -glt_label 6 'ARvAS' \
-glt 1 ../../files/AvAll2.mat -glt_label 7 'AvAll' \
-glt 1 ../../files/FSvFAll2.mat -glt_label 8 'FRvFS' \
-glt 1 ../../files/FSvWin2.mat -glt_label 9 'WinvFS' \
-glt 1 ../../files/FSvLoss2.mat -glt_label 10 'LossvFS' \
-glt 1 ../../files/WinvLoss2.mat -glt_label 11 'WinvLoss' \

Thanks for all your help.

Jodi