AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
September 15, 2009 12:00PM
I tried using the gltsym option, but got the following error message.

Below is also the 3dDeconvolve script I am using. I set it up according to the AFNI how-to on creating optimal timing sequences.

If someone has insight as to what is causing this error, please let me know.

++ 3dDeconvolve: AFNI version=AFNI_2008_07_18_1710 (Apr 15 2009) [32-bit]
++ Authored by: B. Douglas Ward, et al.
++ using NT=257 time points for -nodata
*+ WARNING: Input polort=1; Longest run=257.0 s; Recommended minimum polort=2
** ERROR: -gltsym: can't match symbolic name ''
** ERROR: -gltsym: can't match symbolic name ''
** ERROR: -gltsym: can't match symbolic name ''
** ERROR: -gltsym: can't match symbolic name ''
** ERROR: -gltsym: can't match symbolic name ''
------------------------------------------------------------
GLT matrix from 'SYM: +N111 + N110 + N101 + N100 -N011 -N010 -N001 -N000 + V111 + V110 +V101 +V100 -V011 -V010 -V001 -V000':
0 0 1 1 1 1 -1 -1 -1 -1 1 1 1 1 -1 -1 -1 -1

** ERROR: -gltsym errors immediately above from file 'SYM: +N111 + N110 + N101 + N100 -N011 -N010 -N001 -N000 + V111 + V110 +V101 +V100 -V011 -V010 -V001 -V000'
** FATAL ERROR: Can't continue after the above -gltsym problems!
** Program compile date = Apr 15 2009
Invalid null command.

Script:
#!/bin/tcsh

set stim = 16 \

foreach iter (`count -digits 3 1 100`)

3dDeconvolve \
-nodata \
-nfirst 4 \
-nlast 256 \
-polort 1 \
-num_stimts ${stim} \
-stim_file 1 wav.1D/"wav.hrf.${iter}.1.1D" \
-stim_label 1 "N111" \
-stim_file 2 wav.1D/"wav.hrf.${iter}.2.1D" \
-stim_label 2 "N110" \
-stim_file 3 wav.1D/"wav.hrf.${iter}.3.1D" \
-stim_label 3 "N101" \
-stim_file 4 wav.1D/"wav.hrf.${iter}.4.1D" \
-stim_label 4 "N100" \
-stim_file 5 wav.1D/"wav.hrf.${iter}.5.1D" \
-stim_label 5 "N011" \
-stim_file 6 wav.1D/"wav.hrf.${iter}.6.1D" \
-stim_label 6 "N010" \
-stim_file 7 wav.1D/"wav.hrf.${iter}.7.1D" \
-stim_label 7 "N001" \
-stim_file 8 wav.1D/"wav.hrf.${iter}.8.1D" \
-stim_label 8 "N000" \
-stim_file 9 wav.1D/"wav.hrf.${iter}.9.1D" \
-stim_label 9 "V111" \
-stim_file 10 wav.1D/"wav.hrf.${iter}.10.1D" \
-stim_label 10 "V110" \
-stim_file 11 wav.1D/"wav.hrf.${iter}.11.1D" \
-stim_label 11 "V101" \
-stim_file 12 wav.1D/"wav.hrf.${iter}.12.1D" \
-stim_label 12 "V100" \
-stim_file 13 wav.1D/"wav.hrf.${iter}.13.1D" \
-stim_label 13 "V011" \
-stim_file 14 wav.1D/"wav.hrf.${iter}.14.1D" \
-stim_label 14 "V010" \
-stim_file 15 wav.1D/"wav.hrf.${iter}.15.1D" \
-stim_label 15 "V001" \
-stim_file 16 wav.1D/"wav.hrf.${iter}.16.1D" \
-stim_label 16 "V000" \
-gltsym 'SYM: +N111 + N110 + N101 + N100 -N011 -N010 -N001 -N000 + V111 + V110 +V101 +V100 -V011 -V010 -V001 -V000' -glt_label 1 'HIconst-LOconst' \
#-glt 1 contrasts/contrast_hivslo_const \
#-glt 1 contrasts/contrast_hivslo_sensmo \
#-glt 1 contrasts/contrast_hivslo_freq \

> 3dD.nodata.${iter}

end
Subject Author Posted

3dDeconvolve -nodata option error message

Anjali September 10, 2009 04:40PM

Re: 3dDeconvolve -nodata option error message

bob cox September 10, 2009 08:38PM

Re: 3dDeconvolve -nodata option error message

Anjali September 11, 2009 12:07PM

Re: 3dDeconvolve -nodata option error message

Anjali September 11, 2009 03:36PM

Re: 3dDeconvolve -nodata option error message

Colm Connolly September 11, 2009 04:43PM

Re: 3dDeconvolve -nodata option error message

Anjali September 15, 2009 12:00PM

Re: 3dDeconvolve -nodata option error message

bob cox September 15, 2009 12:04PM

Re: 3dDeconvolve -nodata option error message

rick reynolds September 15, 2009 12:08PM

Re: 3dDeconvolve -nodata option error message

Anjali September 17, 2009 01:34PM

Re: 3dDeconvolve -nodata option error message

rick reynolds September 17, 2009 01:52PM

Re: 3dDeconvolve -nodata option error message

Anjali September 17, 2009 02:16PM

Re: 3dDeconvolve -nodata option error message

rick reynolds September 17, 2009 05:07PM