AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
September 17, 2009 01:34PM
Thanks.

I am trying to test a set of 100 timing sequences for the optimal sequence similar to the @stim_analyze script. When I enter the following, I get the error 3dD.nodata.${iter}: Ambiguous. I am not sure why this is since the syntax seems to be the same as in @stim_analyze.

# experiment parameters
set ts = 256
set stim = 16
set num_on = 8

# execution parameters
set iterations = 100
set seed = 1234567
set outdir = stim_results
set LCfile = $outdir/LC_sums

foreach iter ('count -digits 3 1 100')
@ seed = $seed + 1

3dDeconvolve \
-nodata \
#-nfirst 4 \
-nlast 255 \
-polort 1 \
-num_stimts ${stim} \
-stim_file 1 "wav.hrf.${iter}.1.1D" \
-stim_label 1 "N111" \
-stim_file 2 "wav.hrf.${iter}.2.1D" \
-stim_label 2 "N110" \
-stim_file 3 "wav.hrf.${iter}.3.1D" \
-stim_label 3 "N101" \
-stim_file 4 "wav.hrf.${iter}.4.1D" \
-stim_label 4 "N100" \
-stim_file 5 "wav.hrf.${iter}.5.1D" \
-stim_label 5 "N011" \
-stim_file 6 "wav.hrf.${iter}.6.1D" \
-stim_label 6 "N010" \
-stim_file 7 "wav.hrf.${iter}.7.1D" \
-stim_label 7 "N001" \
-stim_file 8 "wav.hrf.${iter}.8.1D" \
-stim_label 8 "N000" \
-stim_file 9 "wav.hrf.${iter}.9.1D" \
-stim_label 9 "V111" \
-stim_file 10 "wav.hrf.${iter}.10.1D" \
-stim_label 10 "V110" \
-stim_file 11 "wav.hrf.${iter}.11.1D" \
-stim_label 11 "V101" \
-stim_file 12 "wav.hrf.${iter}.12.1D" \
-stim_label 12 "V100" \
-stim_file 13 "wav.hrf.${iter}.13.1D" \
-stim_label 13 "V011" \
-stim_file 14 "wav.hrf.${iter}.14.1D" \
-stim_label 14 "V010" \
-stim_file 15 "wav.hrf.${iter}.15.1D" \
-stim_label 15 "V001" \
-stim_file 16 "wav.hrf.${iter}.16.1D" \
-stim_label 16 "V000" \
-gltsym 'SYM: +N111 +N110 +N101 +N100 -N011 -N010 -N001 -N000 +V111 +V110 +V101 +V100 -V011 -V010 -V001 -V000' -glt_label 1 'HIconst-LOconst' \
-gltsym 'SYM: +N111 +N110 -N101 -N100 +N011 +N010 -N001 -N000 +V111 +V110 -V101 -V100 +V011 +V010 -V001 -V000' -glt_label 2 'HIsensmo-LOsensmo' \
-gltsym 'SYM: +N111 -N110 +N101 -N100 +N011 -N010 +N001 -N000 +V111 -V110 +V101 -V100 +V011 -V010 +V001 -V000' -glt_label 3 'HIfreq-LOfreq' \
> 3dD.nodata.${iter}
end
Subject Author Posted

3dDeconvolve -nodata option error message

Anjali September 10, 2009 04:40PM

Re: 3dDeconvolve -nodata option error message

bob cox September 10, 2009 08:38PM

Re: 3dDeconvolve -nodata option error message

Anjali September 11, 2009 12:07PM

Re: 3dDeconvolve -nodata option error message

Anjali September 11, 2009 03:36PM

Re: 3dDeconvolve -nodata option error message

Colm Connolly September 11, 2009 04:43PM

Re: 3dDeconvolve -nodata option error message

Anjali September 15, 2009 12:00PM

Re: 3dDeconvolve -nodata option error message

bob cox September 15, 2009 12:04PM

Re: 3dDeconvolve -nodata option error message

rick reynolds September 15, 2009 12:08PM

Re: 3dDeconvolve -nodata option error message

Anjali September 17, 2009 01:34PM

Re: 3dDeconvolve -nodata option error message

rick reynolds September 17, 2009 01:52PM

Re: 3dDeconvolve -nodata option error message

Anjali September 17, 2009 02:16PM

Re: 3dDeconvolve -nodata option error message

rick reynolds September 17, 2009 05:07PM