AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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cnan
September 14, 2009 10:47AM

Hi,

I have some spm anat files and i used to3d to convert them to afni:

to3d -prefix afni_name analyze_name.hdr

but the orientations are all wrong. The original hdr files are also wrong...Axial view produces sagittal, Sagittal view produces coronal (tipped so that top of the head is pointing leftwards), and Coronal view produces axial, also rotated such that the eyeballs are pointing to the left.

I tried various -orient combinations in to3d but was not able to produce a correctly oriented image. Any suggestions?

thanks,
cnan
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Subject Author Posted

SPM to afni

cnan September 14, 2009 10:47AM

Re: SPM to afni

Daniel Glen September 14, 2009 03:44PM

Re: SPM to afni

cnan September 15, 2009 04:34AM