AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Daniel Glen
September 14, 2009 03:51PM
AFNI does not warp these oblique datasets on-demand one way or the other. The GUI uses the cardinal equivalent of the data as it is stored without any transformations. While viewing the data, you no doubt saw the warnings about dealing with oblique data and using 3dWarp. Using 3dWarp, as you have used it, is the recommended way to transform and view the data. For more precise alignment, you may also use align_epi_anat.py, which will match obliquity (using 3dWarp) and register the EPI and anatomical datasets.
Subject Author Posted

question about oblique images

Nick September 14, 2009 03:05PM

Re: question about oblique images

Daniel Glen September 14, 2009 03:51PM

Re: question about oblique images

Nick September 15, 2009 07:51AM

Re: question about oblique images

Daniel Glen September 15, 2009 09:47AM

Re: question about oblique images

Nick September 15, 2009 03:54PM

Re: question about oblique images

Daniel Glen September 16, 2009 08:37AM

Re: question about oblique images

Nick Oosterhof September 20, 2009 12:41PM

Re: question about oblique images

rick reynolds September 24, 2009 05:15PM

Re: question about oblique images

Nick September 25, 2009 10:11AM