AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
November 09, 2009 01:20PM
We're starting to use 3dDespike with our data and we're trying to find the best way to examine the data pre/post despike. We used -ssave option to save the "spikiness" dataset that contains voxel-wise 's' values from the despike algorithm. My understanding that is any timepoint that has s>2.5 (as the default option) is considered a spike and will be corrected. We'd like to generate a summary statistic for each voxel of the number of timepoints that were corrected by despike and also potentially calculate the number o voxels that had at least 1 spike in their timeseries. I assume this will involve some form of 3dcalc operation.

Can you please advise on the best way to achieve this b type of a statistic

Thanks,
Michael
Subject Author Posted

Despike

Michael Amlung November 09, 2009 01:20PM

Re: Despike

Daniel Glen November 09, 2009 02:29PM

Re: Despike

Michael Amlung November 09, 2009 02:53PM

Re: Despike

Daniel Glen November 09, 2009 05:29PM

Re: Despike

Michael Amlung November 09, 2009 08:54PM

Re: Despike

Michael November 13, 2009 03:48PM

Re: Despike

Michael November 13, 2009 03:55PM

Re: Despike

Daniel Glen November 13, 2009 04:53PM