Hi Jed,
Thanks for the affirmation :) One follow-up question I had was whether 3dSkullStrip, as done on an EPI, applies individual strips to each image of the EPI dataset, or whether it strips the first image, then applies those stripping parameters to the rest of the images.
Also, how are the intensities affected by SkullStrip? Does the -orig_vol option take care of any intensity issues caused by SkullStrip?
Thanks again,
-Andrew