AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
ziad
November 19, 2009 10:51AM
Marc Ettlinger wrote:

> Dear Ziad,
>
> Thanks kindly for your response.
>
> To confirm, using tent will ultimately give me the HRF
> beginning at the time specified in stim_times.
If the 'b' parameter for tent is 0 then yes.

So, if I want to
> treat the times in stim_times as the beginning of 4 sec blocks
> and extract the HRF from the end of these blocks, I need to
> either add 4 to the times in the stim_times files,
You should not skip modeling the first part.
or ignore
> the first 2 TR (TR=2sec) in the HRF time series output and make
> it longer to capture the duration I want.
You should model the response from the time it is expected to begin until the time it is expected to end. Choose whatever portion you want afterward from iresp output.
>
> Does that sound right?
>
> Also, do you know if there is a way to combine conditions via
> -iresp?
I do not know what you mean by that.
>
> Thanks,
> Marc
Subject Author Posted

Extracting times series data for IR from data

Marc Ettlinger November 18, 2009 05:13PM

Re: Extracting times series data for IR from data

ziad November 18, 2009 11:14PM

Re: Extracting times series data for IR from data

Marc Ettlinger November 19, 2009 10:45AM

Re: Extracting times series data for IR from data

ziad November 19, 2009 10:51AM

Re: Extracting times series data for IR from data

Marc Ettlinger November 20, 2009 05:20PM

Re: Extracting times series data for IR from data

David Perlman November 20, 2009 05:45PM

Re: Extracting times series data for IR from data

Marc Ettlinger November 23, 2009 10:13AM