AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 19, 2009 08:10AM
Hi Rick,

Sorry for not being clear enough. I am able to use the threshold tool, but I am not able to use "interactive" thresholding, meaning that I can't have T- or F-statistical data and have SUMA display the p- or q-values. This is the case even when I use a program like 3dBucket or 3dFDR to output the 1D files, which append the type of headers to the 1D file as I showed in my last post.

I hope that describes my question a bit better. Right now I am exporting data in the format of '1-q' so that I can use an absolute threshold of say 0.95 to look at surface vertices with q-values of 0.05 or less. What I'd like to do is have a column of t- or f-statistics and then have it update the p- and q-values dynamically in the viewer, and I just want to check if that's possible.

I'm guessing SUMA may not have the statistical datatypes like Afni 3d datasets, but I'm wondering whether this is possible after seeing some of the ascii header output to 1D files from 3dFDR.

Thanks again,

John
Subject Author Posted

Interactive stats thresholding in SUMA?

John Sheppard December 16, 2009 03:44PM

Re: Interactive stats thresholding in SUMA?

rick reynolds December 18, 2009 03:50PM

Re: Interactive stats thresholding in SUMA?

John Sheppard December 19, 2009 08:10AM

Re: Interactive stats thresholding in SUMA?

rick reynolds December 19, 2009 08:38AM

Re: Interactive stats thresholding in SUMA?

John Sheppard December 19, 2009 08:06PM

Re: Interactive stats thresholding in SUMA?

John Sheppard December 19, 2009 08:25PM

Re: Interactive stats thresholding in SUMA?

John Sheppard December 20, 2009 10:37AM

Re: Interactive stats thresholding in SUMA?

rick reynolds December 20, 2009 10:42AM

Re: Interactive stats thresholding in SUMA?

John Sheppard December 19, 2009 09:17PM