AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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ziad
April 20, 2010 08:58AM
Anjali wrote:

> I would like more information about how exactly the time series
> values of voxels are mapped onto the nodes in SUMA. Since there
> are ~30,000 voxels and the functional data are not
> interpolated, does this mean that each voxel's time series gets
> mapped 6x onto the nodes that correspond to the XYZ
> coordinates? Does this mean that some time series values are
> redundant in the niml.dset files? If you could explain in more
> detail how the values contained in the niml.dset files are
> obtained, I would appreciate it.

Information on that is in the slides in suma.pdf
[afni.nimh.nih.gov]
[afni.nimh.nih.gov]

also see 3dVol2Surf -help
>
> Also, I am not sure what is meant by the fact that the surface
> dataset is "sparse" by default.
Meaning if a node does not get values mapped onto it it is not listed in the output dataset.

When I use ConvertDset, the
> output contains 196,002 rows all with intensity values in them.
Suggesting, perhaps that you had values on all the nodes.

> If I were to use the pad_to_node max_index, what values would
> be substituted with 0 since all rows seem to have values in
> niml.dset file.

All rows having values, does not mean that all nodes have entries.
Perhaps the slides in suma.pdf would help clarify matters.

>
> Thanks,
> Anjali
cheers,
ziad
Subject Author Posted

SUMA ConvertDset question

Anjali April 19, 2010 05:40PM

Re: SUMA ConvertDset question

ziad April 20, 2010 08:58AM

Re: SUMA ConvertDset question

Anjali April 20, 2010 11:06AM