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History of AFNI updates  

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May 16, 2011 06:31PM
The program uber_subject.py is a graphical interface for running single
subject analysis. It is basically a GUI for afni_proc.py.

While it can perform single subject analysis (starting with currently
recommended options, and controls for many), it is also meant to be a
tool for learning (about tcsh scripting and FMRI processing).

In its current state, it cannot import options from a previous analysis
(except when not closing the interface) or verify whether options are
consistent across subjects. That will come when it is well integrated
with uber_proc.py sometime later.

----------------------------------------
uses:

o it is a great starting point for FMRI analysis
o it can be used to quickly analyze a subject, without scripting worries
o it is a great way to learn about new afni_proc.py options
o it is a great way to learn about tcsh scripting
o it demonstrates and encourages good file/dataset naming conventions
o resulting scripts can easily be adapted to entire groups of subjects

----------------------------------------
user responsibilities:

o must still verify processing options are consistent across subjects
o should review afni_proc.py command to be happy with/understand options
o might want to adapt output scripts for analyzing all subjects

----------------------------------------
future enhancements:

The main enhancement to come with be incorporating this under uber_proc.py
(which will be the main processing program, but not for a while). At that
point, one should be able to:

o analyze many subjects/groups using similar processing options
o process all of the data at once (not just one subject at a time)
o generate and run group analysis scripts (3dttest++, 3dMEMA, 3dANOVA*, etc)
o incorporate tools like uber_align_test.py (very many tools)

So uber_subject.py is the beginning of an entire suite of uber_*.py programs,
which will presumably all be packaged under uber_proc.py.

----------------------------------------
installation:

Since uber_subject.py depends on the PyQt4 libraries, there may be some
dependancies to install. On current Linux systems (which unfortunately
does _not_ include Red Hat or CentOS 5), it may amount to typing
"yum install pyqt4" as root.

On mac 10.5 or 10.6, there are 3 packages to install.

Instructions details can be found using: "uber_subject.py -help_install".

Please let me know of any questions or concerns.

- rick

Subject Author Posted

New Program: uber_subject.py

rick reynolds May 16, 2011 06:31PM

Re: New Program: uber_subject.py

Judd May 16, 2011 06:50PM

Re: New Program: uber_subject.py

rick reynolds May 16, 2011 09:10PM

Re: New Program: uber_subject.py

Peter Molfese May 17, 2011 09:44AM

Re: New Program: uber_subject.py

rick reynolds May 17, 2011 10:02AM

Re: New Program: uber_subject.py

rick reynolds May 18, 2011 07:04PM

Re: New Program: uber_subject.py

Peter May 20, 2011 06:26PM

Re: New Program: uber_subject.py

Peter Molfese May 23, 2011 04:43PM

Re: New Program: uber_subject.py

rick reynolds May 24, 2011 08:58AM

Re: New Program: uber_subject.py

Peter Molfese May 24, 2011 10:42AM

Re: New Program: uber_subject.py

rick reynolds May 24, 2011 01:22PM

Re: New Program: uber_subject.py

Peter Molfese May 24, 2011 03:32PM

Re: New Program: uber_subject.py

Peter Molfese May 25, 2011 01:55PM

Re: New Program: uber_subject.py

rick reynolds May 25, 2011 03:12PM

Re: New Program: uber_subject.py

Peter Molfese June 01, 2011 02:37PM

Re: New Program: uber_subject.py

rick reynolds June 01, 2011 03:21PM

Re: New Program: uber_subject.py

Andrew July 09, 2011 07:19PM

Re: New Program: uber_subject.py

rick reynolds July 10, 2011 09:59AM

Re: New Program: uber_subject.py

Andrew Jahn March 03, 2012 05:56PM

Re: New Program: uber_subject.py

Andrew Jahn March 03, 2012 05:58PM

Re: New Program: uber_subject.py

David O'Connor March 06, 2012 12:06AM

Re: New Program: uber_subject.py

rick reynolds March 06, 2012 08:54AM

Re: New Program: uber_subject.py

David O'Connor March 06, 2012 06:02PM

Re: New Program: uber_subject.py

rick reynolds March 06, 2012 08:33PM

Re: New Program: uber_subject.py

Andrew July 11, 2011 12:43AM

Re: New Program: uber_subject.py

rick reynolds July 11, 2011 08:31AM

Re: New Program: uber_subject.py

Andrew July 11, 2011 11:03AM

Re: New Program: uber_subject.py

rick reynolds July 11, 2011 12:02PM

Re: New Program: uber_subject.py

Andrew Jahn July 11, 2011 12:08PM

Re: New Program: uber_subject.py

rick reynolds July 11, 2011 12:23PM

Re: New Program: uber_subject.py

Peter Molfese July 11, 2011 02:48PM

Re: New Program: uber_subject.py

David O'Connor March 01, 2012 07:46PM

Re: New Program: uber_subject.py

rick reynolds March 01, 2012 09:20PM

Re: New Program: uber_subject.py

David O'Connor March 01, 2012 09:45PM

Re: New Program: uber_subject.py

rick reynolds March 01, 2012 09:56PM

Re: New Program: uber_subject.py

David O'Connor March 01, 2012 10:04PM

Re: New Program: uber_subject.py

rick reynolds March 01, 2012 10:28PM

Re: New Program: uber_subject.py

David O'Connor March 01, 2012 11:05PM

Re: New Program: uber_subject.py

rick reynolds March 02, 2012 09:00AM

Re: New Program: uber_subject.py

droyoung May 11, 2012 04:05PM

Re: New Program: uber_subject.py

rick reynolds May 16, 2012 09:29AM



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