AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 23, 2012 11:36AM
When I try this, I don't see a LOT of Gibbs ringing. Depending on your purposes for the image, you could partially suppress this effect by post-filtering the image with something like

3dWinsor -irad 3.5 -prefix anatW anat+orig.HEAD

for example. To get a quick feel for if this might help, you can open the 'Disp' control panel in an AFNI image viewer, and then under the 'Tran 2D' menu, choose 'Winsor21' (which does a 2D Winsorizing filter). You can also open a RowGraph (1 is usually good) to plot the intensity values across the image (at the crosshairs) to see the effects of the filters, switching between datasets, etc.

It is possible to alter the amount of tapering used in the wsinc5 interpolation, but this makes very little difference in the result.

Finally, I'll note that 'resolution' isn't increased by any interpolation method, just the matrix on which the image/volume is reconstructed.
Subject Author Posted

3dAllineate "resample" trick w/ -final wsinc5

jdviviano July 22, 2012 11:17AM

Re: 3dAllineate "resample" trick w/ -final wsinc5

Bob Cox July 23, 2012 11:36AM

Re: 3dAllineate "resample" trick w/ -final wsinc5

jdviviano July 23, 2012 04:39PM

Re: 3dAllineate "resample" trick w/ -final wsinc5

Bob Cox July 23, 2012 07:26PM

Re: 3dAllineate "resample" trick w/ -final wsinc5

jdviviano July 24, 2012 12:53AM

Re: 3dAllineate "resample" trick w/ -final wsinc5

Bob Cox July 24, 2012 11:03AM

Re: 3dAllineate "resample" trick w/ -final wsinc5

jdviviano July 24, 2012 04:53PM

Re: 3dAllineate "resample" trick w/ -final wsinc5

Bob Cox July 25, 2012 09:52AM

Re: 3dAllineate "resample" trick w/ -final wsinc5

jdviviano July 25, 2012 06:27PM

Re: 3dAllineate "resample" trick w/ -final wsinc5

Bob Cox July 26, 2012 04:25PM

Re: 3dAllineate "resample" trick w/ -final wsinc5

jdviviano September 13, 2012 09:52AM

Re: 3dAllineate "resample" trick w/ -final wsinc5

Bob Cox September 13, 2012 03:49PM

Re: 3dAllineate "resample" trick w/ -final wsinc5

jdviviano September 13, 2012 07:17PM