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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
History of AFNI updates
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Great, thank you! We got @sswarper command to work. If we run into additional problems with other functions in afni_proc.py, we'll reinstall these other functions as you indicate.
Thank you,
Danny
by
DannyS
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AFNI Message Board
It looks like some commands/functions didn't update properly when we updated our binaries:
-------------------------------- general ---------------------------------
architecture: 64bit
cpu type: x86_64
system: Linux
release: 5.4.0-148-generic
version: #165-Ubuntu SMP Tue Apr 18 08:53:12 UTC 2023
distribution: Ubun
by
DannyS
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AFNI Message Board
I am re-running the command now to produce the full command output from the terminal. While doing this, I did notice this early on:
3dSkullStrip: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
++ SSW Step 3
++ OpenMP thread count = 15
Maybe it is due to not having all of the libraries updated?
Thanks,
Danny
by
DannyS
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AFNI Message Board
Good Afternoon,
We had recently updated our AFNI binaries a little bit ago:
afni -ver
Precompiled binary linux_openmp_64: May 8 2023 (Version AFNI_23.1.05 'Publius Helvius Pertinax')
When I run @sswarper using this command:
@SSwarper -input sub1065_anatPU2.nii.gz -base MNI152_2009_template_SSW.nii.gz -subid sub1065 -SSopt '-blur_fwhm 2' -odir anatwarp2/
I get the
by
DannyS
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AFNI Message Board
Hello AFNI Experts,
I am reviewing the 1D files outputted from ETAC. I am wondering what the min/max values are?
Are they the min/max t-values or some other metric?
Thanks,
Danny
by
DannyS
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AFNI Message Board