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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
History of AFNI updates
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Hello all,
Actually, belay this request for help as I seem to have found the issue. Tried to retrace steps between first successful GUI launch and current error, think on big changes I made. Seems that difference between WSL 1 and WSL 2 is the key. After Ubuntu install, converted to WSL 2 later part of install as per Windows' instructions (https://docs.microsoft.com/en-us/windows/wsl/inst
by
Patrick Reyes
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AFNI Message Board
Hello all,
Have recently downloaded and prepped AFNI on new Win10 machine (use WSL), which I've done once before. In early part of install, following documentation's instructions, typed 'afni' and the GUI popped up correctly. And yes, have xLaunch installed and run that before running Ubuntu. Display number was set to -1 to let xLaunch choose automatically. I'm also ru
by
Patrick Reyes
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AFNI Message Board
Ah, I see. Thank you. Have just been following the Linux instructions, overlooked the Windows instructions. If there are any problems, I'll jot them back here.
by
Patrick Reyes
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AFNI Message Board
Yes. As best as I can remember correctly, it was a combination of :
update.packages(installed.packages(priority="NA"), checkBuilt=TRUE, ask=FALSE)
For ps, I executed the following in R itself (as I understand it, helps get aroudn the issue of staged installation now default in R
R
Sys.setenv(R_INSTALL_STAGED = FALSE)
install.packages("ps")
And for everything el
by
Patrick Reyes
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AFNI Message Board
Hello,
Following installation of AFNI, I can't seem to launch the AFNI and SUMA GUIs. I'll note that I'm running an Ubuntu terminal on Windows 10.
Here is the output for 'afni'
Precompiled binary linux_ubuntu_16_64: Sep 13 2019 (Version AFNI_19.2.24 'Claudius')
** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to T Holroyd for "
by
Patrick Reyes
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AFNI Message Board
Hello,
I write to say that I seem to have resolved this issue by doing non-staged installation of the R packages (among other things). However I'm going to open up another thread because I have another problem. While afni says that there are no problems and the installation is now good, when I try to launch afni or suma, the GUIs fail to launch. Will explain in the new thread. Thank you f
by
Patrick Reyes
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AFNI Message Board
Hello,
I write to say that I seem to have resolved this issue by doing non-staged installation of the R packages (among other things). However I'm going to open up another thread because I have another problem. While afni says that there are no problems and the installation is now good, when I try to launch afni or suma, the GUIs fail to launch. Will explain in the new thread. Thank you f
by
Patrick Reyes
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AFNI Message Board
Here is the output for~> sudo apt install libudunits2-dev
Reading package lists... Done
Building dependency tree
Reading state information... Done
libudunits2-dev is already the newest version (2.2.26-1).
0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
But rPkgsInstall -pkgs ALL outputs:
Installing package into ‘/home/patreyes/R’
(as ‘lib’ is unspecified)
also
by
Patrick Reyes
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AFNI Message Board
So I was able to run 'sudo apt install libudunits2-dev' and download it, but when I ran 'rPkgsInstall -pkgs ALL', I still got the same errors as before.
by
Patrick Reyes
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AFNI Message Board
When I tried 'apt install libudunits2-dev', this was the output
~> apt install libudunits2-dev
E: Could not open lock file /var/lib/dpkg/lock-frontend - open (13: Permission denied)
E: Unable to acquire the dpkg frontend lock (/var/lib/dpkg/lock-frontend), are you root?
by
Patrick Reyes
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AFNI Message Board
Here is the output for ls -ld ~/R
drwxrwxrwx 1 patreyes patreyes 4096 Sep 13 14:11 /home/patreyes/R
by
Patrick Reyes
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AFNI Message Board
Hello,
I'm having some trouble installing R packages for AFNI. I'm running Ubuntu in a terminal in Windows 10. I'm also a beginner to both AFNI and Unix/Linux.
Here is the output for rPkgsInstall -pkgs ALL
Installing package into ‘/home/patreyes/R’
(as ‘lib’ is unspecified)
also installing the dependencies ‘ps’, ‘processx’, ‘callr’, ‘units’, ‘pkgbuild’, ‘sf’, ‘rstan’,
by
Patrick Reyes
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AFNI Message Board