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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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Hello again!
Thank you for all your help with my newbie questions.
I am getting an error running @ClustExp_CatLab.
I will put the full output below. It seems that the error occurs at 3dcalc (Argument list too long).
I'm pretty sure my csv file is correctly formatted (no headers, different subbrik per line), I copy and paste example rows at the end.
Thanks so much,
Maria
$
by
mironside
-
AFNI Message Board
Thanks so much Gang,
I followed the manual to add these but it still isn't working.
Apologies if I am missing something obvious, I am new to AFNI.
Best,
Maria
3dMVM \
-prefix 3dMVM.FC.PlusvMinus.65Dep.130DepAnx \
-bsVars 'group' \
-wsVars 'run' \
-jobs 20 \
-num_glt 13 \
-gltLabel 1 'R2EvR1' -gltCode 1 'run : 1*R2E -1*R1' \
by
mironside
-
AFNI Message Board
Hello gang et al,
Apologies for the noob question but I can't figure out what I have coded inappropriately in my 3dMVM.
Thanks so much for all of your time and this great resource!
Best,
Maria
3dMVM \
-prefix 3dMVM.FC.PlusvMinus.65Dep.130DepAnx \
-jobs 20 \
-num_glt 13 \
-gltLabel 1 'R2EvR1' -gltCode 1 'run : 1*R2E -1*R1' \
-gltLabel 2 'R2LvR1
by
mironside
-
AFNI Message Board
Hi there!
I am a little stuck on this issue and installing firefox didn't seem to work and I still get the slider error.
The `name` provided ('area-chart') is deprecated in Font Awesome 5:
* please consider using 'chart-area' or 'fas fa-chart-area' instead
* use the `verify_fa = FALSE` to deactivate these messages
Warning: Error in : In sliderInput():
by
mironside
-
AFNI Message Board
Thanks for your help!
I tried firefox (had to wait for a few days fo it to be installed by IT) and I am getting the same error.
I used the tutorial at
to set up my cluster explorer files and it all seemed to run fine.
ClustExp_StatParse.py \
-StatDSET 3dMVM.VIA.HeartStomachVTarget_GLT+tlrc.BRIK \
-MeanBrik 1 \
-ThreshBrik 1 \
-SubjDSET all_subjects_data.nii.gz \
-SubjTable Hist
by
mironside
-
AFNI Message Board
Hi there,
I am having problems with @ClustExp_run_shiny and getting the following error:
An error has occurred!
In sliderInput(): `min`, `max`, and `value` cannot be NULL, NA, or empty.
My browser (chromium on linux) doesn't launch the app at all, just gives this error.
My AFNI viewer is showing a thresholded image and I moved the crosshair around (I assume this is the slider to
by
mironside
-
AFNI Message Board
Just to close this off I installed the latest version of AFNI and it is all running now!
Thanks for your help,
Maria
by
mironside
-
AFNI Message Board
Hi Gang,
Thanks again!
My AFNI version is
Version AFNI_20.0.19 'Galba'
My systems administrator did offer to upgrade, could that be the problem?
Best,
Maria
by
mironside
-
AFNI Message Board
Thanks so much for the speedy reply!
Unfortunately it didn't fix the issue and I am getting the same error.
Any other ideas of things to try would be most appreciated.
I attach my code again for convenience
module load afni
module load R/4.0.3
3dMVM \
-prefix 3dMVM.VIA.HeartStomachVTarget_GLT#0_Coef.49Dep.94DepAnx \
-jobs 20 \
-num_glt 1 \
-bsVars 'group' \
-gltLab
by
mironside
-
AFNI Message Board
Hello AFNI experts and specifically Gang,
I am having a similar error:
Error in outList[[1]][] : subscript out of bounds
Calls: process.MVM.opts -> gl_Constr
Execution halted
Here is the full call:
3dMVM \
-prefix 3dMVM.VIA.HeartStomachVTarget_GLT#0_Coef.49Dep.94DepAnx \
-jobs 20 \
-num_glt 1 \
-bsVars 'group' \
-gltLabel 1 'DepvsDepAnx' \
-gltCo
by
mironside
-
AFNI Message Board