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3ddata.h File Reference

#include <unistd.h>
#include <stdlib.h>
#include <stdio.h>
#include <string.h>
#include <math.h>
#include <errno.h>
#include <ctype.h>
#include <X11/Intrinsic.h>
#include "mcw_malloc.h"
#include "killer.h"
#include "vecmat.h"
#include "machdep.h"
#include "mrilib.h"
#include "tagset.h"
#include "thd_compress.h"
#include "niml.h"
#include "afni_suma.h"
#include <stdarg.h>

Go to the source code of this file.


Data Structures
union	ATR_any
struct	ATR_float
struct	ATR_int
struct	ATR_string
struct	FD_brick
struct	MCW_function_list
struct	MCW_idcode
struct	MRI_3dalign_basis
struct	MRI_warp3D_align_basis
struct	MRI_warp3D_param_def
struct	THD_3dim_dataset
struct	THD_3dim_dataset_array
struct	THD_affine_warp
struct	THD_brick_stats
struct	THD_coorder
struct	THD_datablock
struct	THD_datablock_array
struct	THD_dataxes
struct	THD_diskptr
struct	THD_linear_mapping
struct	THD_marker_set
struct	THD_session
struct	THD_sessionlist
struct	THD_slist_find
struct	THD_statistics
struct	THD_string_array
struct	THD_talairach_12_warp
struct	THD_timeaxis
union	THD_warp
struct	Tmask
struct	XtPointer_array
Defines
#define	DSET_VERSION_LATEST "1996-07-10"
#define	DSET_VERSION_COMPARE(v1, v2) strcmp(v1,v2)
#define	ALLOW_MINC
#define	STRING_HAS_SUFFIX(ss, suf)
#define	THD_MAX_NAME 256
#define	THD_MAX_LABEL 38
#define	THD_MAX_PREFIX (127+1)
#define	THD_MAX_VIEWCODE (4+1)
#define	THD_MAX_SUFFIX (4+1)
#define	THD_MAX_FILECODE (THD_MAX_PREFIX+THD_MAX_VIEWCODE)
#define	THD_DEFAULT_LABEL "Viggo!"
#define	THD_MAX_SESSION_SIZE 4096
#define	THD_MAX_NUM_SESSION 80
#define	THD_MAX_CHOICES THD_MAX_SESSION_SIZE
#define	THD_MAX_MARKSET 5
#define	FAIL -1
#define	SUCCESS 1
#define	ILLEGAL_TYPE -666
#define	RETURNS_STRING 1
#define	NEEDS_DSET_INDEX 2
#define	PROCESS_MRI_IMAGE 4
#define	FUNC_0D 0
#define	FUNC_1D 1
#define	FUNC_2D 2
#define	FUNC_3D 3
#define	FUNC_FIM 71
#define	TWO_ONE(x, y) x ## y
#define	TWO_TWO(x, y) TWO_ONE(x,y)
#define	COPY_INTO_STRUCT(str, off, type, ptr, n) (void) memcpy( (char )(&(str))+(off), (char )(ptr), (n)*sizeof(type) )
#define	COPY_FROM_STRUCT(str, off, type, ptr, n) (void) memcpy( (char )(ptr), (char )(&(str))+(off), (n)*sizeof(type) )
#define	MCW_strncpy(dest, src, n) ( (void) strncpy( (dest) , (src) , (n)-1 ) , (dest)[(n)-1] = '\0' )
#define	IC_DSET 44301
#define	IC_FLIM 55402
#define	INC_XTARR 8
#define	INIT_XTARR(name)
#define	ADDTO_XTARR(name, bblk)
#define	XTARR_NUM(name) ((name)->num)
#define	XTARR_XT(name, i) ((name)->ar[i])
#define	XTARR_IC(name, i) ((name)->ic[i])
#define	FREE_XTARR(name)
#define	DESTROY_XTARR FREE_XTARR
#define	SARR_STRING(ss, qq) ((ss)->ar[(qq)])
#define	SARR_NUM(ss) ((ss)->num)
#define	INC_SARR 64
#define	INIT_SARR(name)
#define	ADDTO_SARR(name, str)
#define	REMOVEFROM_SARR(name, ijk)
#define	DESTROY_SARR(name)
#define	PATH_CONCAT(pout, p1, p2)
#define	ATR_STRING_TYPE 0
#define	ATR_FLOAT_TYPE 1
#define	ATR_INT_TYPE 2
#define	FIRST_ATR_TYPE 0
#define	LAST_ATR_TYPE 2
#define	ZBLOCK 126
#define	MAPPING_LINEAR_TYPE 0
#define	MAPPING_LINEAR_STR "LINEAR_MAPPING"
#define	FIRST_MAPPING_TYPE 0
#define	LAST_MAPPING_TYPE 0
#define	COPY_LMAP_BOUNDS(m1, m2) ( (m1).bot=(m2).bot , (m1).top=(m2).top )
#define	LOAD_INVERSE_LMAP(map)
#define	MAPPING_LINEAR_FSTART XtOffsetOf(THD_linear_mapping,mfor)
#define	MAPPING_LINEAR_FEND (XtOffsetOf(THD_linear_mapping,top)+sizeof(THD_fvec3))
#define	MAPPING_LINEAR_FSIZE ((MAPPING_LINEAR_FEND-MAPPING_LINEAR_FSTART)/sizeof(float))
#define	DUMP_LMAP(m)
#define	MARKS_MAXNUM 10
#define	MARKS_MAXLAB 20
#define	MARKS_MAXHELP 256
#define	MARKS_MAXFLAG 8
#define	MARKS_FSIZE (MARKS_MAXNUM*3)
#define	MARKS_FSTART XtOffsetOf(THD_marker_set,xyz)
#define	MARKS_LSIZE (MARKS_MAXNUM*MARKS_MAXLAB)
#define	MARKS_LSTART XtOffsetOf(THD_marker_set,label)
#define	MARKS_HSIZE (MARKS_MAXNUM*MARKS_MAXHELP)
#define	MARKS_HSTART XtOffsetOf(THD_marker_set,help)
#define	MARKS_ASIZE MARKS_MAXFLAG
#define	MARKS_ASTART XtOffsetOf(THD_marker_set,aflags)
#define	MARKSET_ALIGN 1
#define	MARKSET_BOUNDING 2
#define	MARKACTION_NONE 0
#define	MARKACTION_WARP 1
#define	MARKACTION_REGISTER 2
#define	NMARK_ALIGN 5
#define	IMARK_ACSE 0
#define	IMARK_ACPM 1
#define	IMARK_PCIE 2
#define	IMARK_MSA1 3
#define	IMARK_MSA2 4
#define	NMARK_BOUNDING 6
#define	IMARK_MANT 0
#define	IMARK_MPOS 1
#define	IMARK_MSUP 2
#define	IMARK_MINF 3
#define	IMARK_MLEF 4
#define	IMARK_MRIG 5
#define	ATLAS_FRONT_TO_AC 70.0
#define	ATLAS_AC_TO_PC 23.0
#define	ATLAS_PC_TO_BACK 79.0
#define	ATLAS_BOT_TO_AC 42.0
#define	ATLAS_AC_TO_TOP 74.0
#define	ATLAS_AC_TO_LAT 68.0
#define	ATLAS_BBOX_LAT 80.0
#define	ATLAS_BBOX_ANT 80.0
#define	ATLAS_BBOX_POS 110.0
#define	ATLAS_BBOX_INF 55.0
#define	ATLAS_BBOX_SUP 85.0
#define	ATLAS_BBOX_INF_NEW 65.0
#define	ATLAS_ALIGNBOX_LAT 95.0
#define	ATLAS_ALIGNBOX_ANT 95.0
#define	ATLAS_ALIGNBOX_POS 140.0
#define	ATLAS_ALIGNBOX_SUP 100.0
#define	ATLAS_ALIGNBOX_INF 70.0
#define	MAX_ALLOWED_DEVIATION 2.0
#define	MIN_ALLOWED_DEVIATION 0.5
#define	WARP_AFFINE_TYPE 0
#define	WARP_AFFINE_STR "WARP_AFFINE"
#define	WARP_TALAIRACH_12_TYPE 1
#define	WARP_TALAIRACH_12_STR "WARP_TALAIRACH_12"
#define	FIRST_WARP_TYPE 0
#define	LAST_WARP_TYPE 1
#define	RESAM_NN_TYPE 0
#define	RESAM_NN_STR "Nearest Neighbor"
#define	RESAM_LINEAR_TYPE 1
#define	RESAM_LINEAR_STR "Linear Interpolation"
#define	RESAM_CUBIC_TYPE 2
#define	RESAM_CUBIC_STR "Cubic Interpolation"
#define	RESAM_BLOCK_TYPE 3
#define	RESAM_BLOCK_STR "Blocky Interpolation"
#define	FIRST_RESAM_TYPE 0
#define	LAST_RESAM_TYPE 3
#define	NSTR_SHORT_RESAM 2
#define	W_RAS 0
#define	W_LAS 1
#define	W_RMS 2
#define	W_LMS 3
#define	W_RPS 4
#define	W_LPS 5
#define	W_RAI 6
#define	W_LAI 7
#define	W_RMI 8
#define	W_LMI 9
#define	W_RPI 10
#define	W_LPI 11
#define	WARP_TALAIRACH_12_SIZE (12*MAPPING_LINEAR_FSIZE)
#define	DUMP_T12_MAP(t12, xx, yy, zz)
#define	DUMP_T12_WARP(t12)
#define	WARP_AFFINE_SIZE (MAPPING_LINEAR_FSIZE)
#define	ISVALID_WARP(ww)
#define	IDENTITY_WARP
#define	ROTGEN_WARP(th, ff, aa, bb)
#define	ROTX_WARP(th) ROTGEN_WARP(th,0,1,2)
#define	ROTY_WARP(th) ROTGEN_WARP(th,1,2,0)
#define	ROTZ_WARP(th) ROTGEN_WARP(th,2,0,1)
#define	CEN_WARP(ww, xin, yin, zin, xout, yout, zout)
#define	DISKPTR_TYPE 47
#define	THD_MAX_RANK 3
#define	THD_MIN_RANK 3
#define	THD_MAX_RANK_EVER 5
#define	DATASET_HEADER_SUFFIX "HEAD"
#define	DATASET_BRICK_SUFFIX "BRIK"
#define	DATASET_NOTES_SUFFIX "NOTE"
#define	STORAGE_UNDEFINED 0
#define	STORAGE_BY_BRICK 2
#define	STORAGE_BY_MINC 3
#define	STORAGE_BY_VOLUMES 4
#define	STORAGE_BY_ANALYZE 5
#define	STORAGE_BY_CTFMRI 6
#define	STORAGE_BY_CTFSAM 7
#define	STORAGE_BY_1D 8
#define	STORAGE_BY_3D 9
#define	STORAGE_BY_NIFTI 10
#define	STORAGE_BY_MPEG 11
#define	LAST_STORAGE_MODE 11
#define	ATRNAME_BYTEORDER "BYTEORDER_STRING"
#define	ISVALID_DISKPTR(dk) ( (dk)!=NULL && (dk)->type==DISKPTR_TYPE )
#define	PREFIX_VIEW_TO_FILECODE(pr, vv, fc) sprintf( (fc),"%s+%s",(pr),(vv) )
#define	FILECODE_TO_PREFIX(fc, pr)
#define	FILENAME_TO_PREFIX(fn, pr)
#define	DATABLOCK_TYPE 37
#define	DATABLOCK_MEM_UNDEFINED 1
#define	DATABLOCK_MEM_MALLOC 2
#define	DATABLOCK_MEM_MMAP 4
#define	DATABLOCK_MEM_ANY (DATABLOCK_MEM_MALLOC \| DATABLOCK_MEM_MMAP)
#define	DATABLOCK_MEM_SHARED 8
#define	ISVALID_MEM_CODE(mm)
#define	MMAP_THRESHOLD 999999
#define	DBLK_mallocize(db) THD_force_malloc_type((db),DATABLOCK_MEM_MALLOC)
#define	DBLK_mmapize(db) THD_force_malloc_type((db),DATABLOCK_MEM_MMAP)
#define	DBLK_anyize(db) THD_force_malloc_type((db),DATABLOCK_MEM_ANY)
#define	DBLK_IS_MALLOC(db) ((db)->malloc_type == DATABLOCK_MEM_MALLOC)
#define	DBLK_IS_MMAP(db) ((db)->malloc_type == DATABLOCK_MEM_MMAP)
#define	DBLK_IS_SHARED(db) ((db)->malloc_type == DATABLOCK_MEM_SHARED)
#define	DBLK_shareize(db) THD_force_malloc_type((db),DATABLOCK_MEM_SHARED)
#define	DBLK_lock(db) ((db)->locked = 1)
#define	DBLK_unlock(db) ((db)->locked = ((db)->locked<2) ? 0 : 2)
#define	DBLK_LOCKED(db) ((db)->locked)
#define	DBLK_superlock(db) ((db)->locked = 2)
#define	DBLK_IS_MASTERED(db) ((db)->master_nvals > 0 && (db)->master_ival != NULL && (db)->master_bytes != NULL)
#define	THD_null_datablock_auxdata(blk)
#define	ISVALID_DATABLOCK(bk) ( (bk) != NULL && (bk)->type == DATABLOCK_TYPE )
#define	ISVALID_DBLK ISVALID_DATABLOCK
#define	INC_DBARR 8
#define	INIT_DBARR(name)
#define	ADDTO_DBARR(name, bblk)
#define	FREE_DBARR(name)
#define	DATAXES_TYPE 27
#define	DEFAULT_RESAMPLE_VOX 1.0
#define	ORI_R2L_TYPE 0
#define	ORI_R2L_STR "Right-to-Left"
#define	ORI_L2R_TYPE 1
#define	ORI_L2R_STR "Left-to-Right"
#define	ORI_P2A_TYPE 2
#define	ORI_P2A_STR "Posterior-to-Anterior"
#define	ORI_A2P_TYPE 3
#define	ORI_A2P_STR "Anterior-to-Posterior"
#define	ORI_I2S_TYPE 4
#define	ORI_I2S_STR "Inferior-to-Superior"
#define	ORI_S2I_TYPE 5
#define	ORI_S2I_STR "Superior-to-Inferior"
#define	ORI_GEN_TYPE 6
#define	ORI_GEN_STR "General"
#define	FIRST_ORIENT_TYPE 0
#define	LAST_ORIENT_TYPE 5
#define	LONGEST_ORIENT_TYPESTR strlen(ORI_P2A_STR)
#define	ORIENT_OPPOSITE(orc) ( ((orc) % 2 == 0) ? ((orc)+1) : ((orc)-1) )
#define	DAXES_XCEN(dax) ((dax)->xxorg + 0.5((dax)->nxx - 1) (dax)->xxdel)
#define	DAXES_YCEN(dax) ((dax)->yyorg + 0.5((dax)->nyy - 1) (dax)->yydel)
#define	DAXES_ZCEN(dax) ((dax)->zzorg + 0.5((dax)->nzz - 1) (dax)->zzdel)
#define	DAXES_NUM(dax, ori)
#define	DATAXES_TO_DISKPTR(ds)
#define	ISVALID_DATAXES(dax) ( (dax) != NULL && (dax)->type == DATAXES_TYPE )
#define	EQUIV_DATAXES(cax, dax)
#define	TIMEAXIS_TYPE 907
#define	UNITS_MSEC_TYPE 77001
#define	UNITS_SEC_TYPE 77002
#define	UNITS_HZ_TYPE 77003
#define	UNITS_TYPE_LABEL(uu) UNITS_TYPE_labelstring[(uu)-UNITS_MSEC_TYPE]
#define	ISVALID_TIMEAXIS(tax) ((tax) != NULL && (tax)->type == TIMEAXIS_TYPE)
#define	STATISTICS_TYPE 17
#define	ISVALID_STATISTIC(st) ( (st) != NULL && (st)->type == STATISTICS_TYPE )
#define	ISVALID_BSTAT(bst) ( (bst).min <= (bst).max )
#define	INVALIDATE_BSTAT(bst) ( (bst).min = 1.0 , (bst).max = -1.0 )
#define	KILL_STATISTIC(st)
#define	MCW_IDPREFIX "NIH_"
#define	MCW_IDSIZE 32
#define	MCW_IDDATE 48
#define	EQUIV_IDCODES(id, ie) (strncmp((id).str,(ie).str,MCW_IDSIZE) == 0)
#define	EQUIV_DSETS(ds, es)
#define	DUPLICATE_DSETS(ds, es)
#define	ZERO_IDCODE(id) ((id).str[0] = (id).date[0] = '\0')
#define	ISZERO_IDCODE(id) ((id).str[0] == '\0')
#define	ATRNAME_IDSTRING "IDCODE_STRING"
#define	ATRNAME_IDDATE "IDCODE_DATE"
#define	ATRNAME_IDANATPAR "IDCODE_ANAT_PARENT"
#define	ATRNAME_IDWARPPAR "IDCODE_WARP_PARENT"
#define	HEAD_ANAT_TYPE 0
#define	HEAD_ANAT_STR "3DIM_HEAD_ANAT"
#define	HEAD_FUNC_TYPE 1
#define	HEAD_FUNC_STR "3DIM_HEAD_FUNC"
#define	GEN_ANAT_TYPE 2
#define	GEN_ANAT_STR "3DIM_GEN_ANAT"
#define	GEN_FUNC_TYPE 3
#define	GEN_FUNC_STR "3DIM_GEN_FUNC"
#define	FIRST_3DIM_TYPE 0
#define	LAST_3DIM_TYPE 3
#define	LONGEST_3DIM_TYPESTR strlen(HEAD_ANAT_STR)
#define	VIEW_ORIGINAL_TYPE 0
#define	VIEW_ORIGINAL_STR "Original View"
#define	VIEW_ORIGINAL_CODE "orig"
#define	VIEW_ACPCALIGNED_TYPE 1
#define	VIEW_ACPCALIGNED_STR "AC-PC Aligned"
#define	VIEW_ACPCALIGNED_CODE "acpc"
#define	VIEW_TALAIRACH_TYPE 2
#define	VIEW_TALAIRACH_STR "Talairach View"
#define	VIEW_TALAIRACH_CODE "tlrc"
#define	VIEW_REGISTERED_TYPE 3
#define	VIEW_REGISTERED_STR "Registered View"
#define	VIEW_REGISTERED_CODE "rgst"
#define	FIRST_VIEW_TYPE 0
#define	LAST_VIEW_TYPE 2
#define	LONGEST_VIEW_TYPESTR strlen(VIEW_REGISTERED_STR)
#define	FUNC_FIM_TYPE 0
#define	FUNC_FIM_STR "Intensity"
#define	FUNC_FIM_PREFIX "fim"
#define	FUNC_FIM_LABEL "fim"
#define	FUNC_FIM_DESCRIPTOR "Functional Intensity"
#define	FUNC_FIM_MASK (1 << FUNC_FIM_TYPE)
#define	FUNC_PAIR_TYPE 1
#define	FUNC_PAIR_STR "Inten+Thr"
#define	FUNC_PAIR_PREFIX "fith"
#define	FUNC_THR_TYPE FUNC_PAIR_TYPE
#define	FUNC_THR_STR FUNC_PAIR_STR
#define	FUNC_THR_PREFIX FUNC_PAIR_PREFIX
#define	FUNC_THR_TOP 1.0
#define	FUNC_THR_SCALE_SHORT 10000
#define	FUNC_THR_SCALE_BYTE 100
#define	FUNC_THR_LABEL "Thr "
#define	FUNC_THR_DESCRIPTOR "Old style threshold"
#define	FUNC_THR_MASK (1 << FUNC_PAIR_TYPE)
#define	FUNC_COR_TYPE 2
#define	FUNC_COR_STR "Inten+Cor"
#define	FUNC_COR_PREFIX "fico"
#define	FUNC_COR_TOP 1.0
#define	FUNC_COR_SCALE_SHORT 10000
#define	FUNC_COR_SCALE_BYTE 100
#define	FUNC_COR_LABEL "Corr"
#define	FUNC_COR_DESCRIPTOR "Correlation Coefficient"
#define	FUNC_COR_MASK (1 << FUNC_COR_TYPE)
#define	FUNC_TT_TYPE 3
#define	FUNC_TT_STR "Inten+Ttest"
#define	FUNC_TT_PREFIX "fitt"
#define	FUNC_TT_TOP 10.0
#define	FUNC_TT_SCALE_SHORT 1000
#define	FUNC_TT_SCALE_BYTE 10
#define	FUNC_TT_LABEL "T-t "
#define	FUNC_TT_DESCRIPTOR "Student t-statistic"
#define	FUNC_TT_MASK (1 << FUNC_TT_TYPE)
#define	FUNC_FT_TYPE 4
#define	FUNC_FT_STR "Inten+Ftest"
#define	FUNC_FT_PREFIX "fift"
#define	FUNC_FT_TOP 100.0
#define	FUNC_FT_SCALE_SHORT 100
#define	FUNC_FT_SCALE_BYTE 1
#define	FUNC_FT_LABEL "F-t "
#define	FUNC_FT_DESCRIPTOR "Fisher F-statistic"
#define	FUNC_FT_MASK (1 << FUNC_FT_TYPE)
#define	FUNC_ZT_TYPE 5
#define	FUNC_ZT_STR "Inten+Ztest"
#define	FUNC_ZT_PREFIX "fizt"
#define	FUNC_ZT_TOP 10.0
#define	FUNC_ZT_SCALE_SHORT 1000
#define	FUNC_ZT_SCALE_BYTE 10
#define	FUNC_ZT_LABEL "Z-t "
#define	FUNC_ZT_DESCRIPTOR "Normal (Gaussian) Z"
#define	FUNC_ZT_MASK (1 << FUNC_ZT_TYPE)
#define	FUNC_CT_TYPE 6
#define	FUNC_CT_STR "Inten+ChiSq"
#define	FUNC_CT_PREFIX "fict"
#define	FUNC_CT_TOP 100.0
#define	FUNC_CT_SCALE_SHORT 100
#define	FUNC_CT_SCALE_BYTE 1
#define	FUNC_CT_LABEL "ChiS"
#define	FUNC_CT_DESCRIPTOR "Chi-Squared statistic"
#define	FUNC_CT_MASK (1 << FUNC_CT_TYPE)
#define	FUNC_BT_TYPE 7
#define	FUNC_BT_STR "Inten+Beta"
#define	FUNC_BT_PREFIX "fibt"
#define	FUNC_BT_TOP 1.0
#define	FUNC_BT_SCALE_SHORT 10000
#define	FUNC_BT_SCALE_BYTE 100
#define	FUNC_BT_LABEL "Beta"
#define	FUNC_BT_DESCRIPTOR "Beta Distribution"
#define	FUNC_BT_MASK (1 << FUNC_BT_TYPE)
#define	FUNC_BN_TYPE 8
#define	FUNC_BN_STR "Inten+Binom"
#define	FUNC_BN_PREFIX "fibn"
#define	FUNC_BN_TOP 100.0
#define	FUNC_BN_SCALE_SHORT 100
#define	FUNC_BN_SCALE_BYTE 1
#define	FUNC_BN_LABEL "Bino"
#define	FUNC_BN_DESCRIPTOR "Binomial Distribution"
#define	FUNC_BN_MASK (1 << FUNC_BN_TYPE)
#define	FUNC_GT_TYPE 9
#define	FUNC_GT_STR "Inten+Gamma"
#define	FUNC_GT_PREFIX "figt"
#define	FUNC_GT_TOP 10.0
#define	FUNC_GT_SCALE_SHORT 1000
#define	FUNC_GT_SCALE_BYTE 10
#define	FUNC_GT_LABEL "Gam "
#define	FUNC_GT_DESCRIPTOR "Gamma Distribution"
#define	FUNC_GT_MASK (1 << FUNC_GT_TYPE)
#define	FUNC_PT_TYPE 10
#define	FUNC_PT_STR "Inten+Poisson"
#define	FUNC_PT_PREFIX "fipt"
#define	FUNC_PT_TOP 100.0
#define	FUNC_PT_SCALE_SHORT 100
#define	FUNC_PT_SCALE_BYTE 1
#define	FUNC_PT_LABEL "Pois"
#define	FUNC_PT_DESCRIPTOR "Poisson Distribution"
#define	FUNC_PT_MASK (1 << FUNC_PT_TYPE)
#define	FUNC_BUCK_TYPE 11
#define	FUNC_BUCK_STR "Func-Bucket"
#define	FUNC_BUCK_PREFIX "fbuc"
#define	FUNC_BUCK_TOP 1.0
#define	FUNC_BUCK_SCALE_SHORT 1
#define	FUNC_BUCK_SCALE_BYTE 1
#define	FUNC_BUCK_LABEL "Buck"
#define	FUNC_BUCK_DESCRIPTOR "Function Bucket"
#define	FUNC_BUCK_MASK (1 << FUNC_BUCK_TYPE)
#define	FIRST_FUNC_TYPE 0
#define	LAST_FUNC_TYPE 11
#define	FIRST_STAT_TYPE 2
#define	LAST_STAT_TYPE 10
#define	FUNC_ALL_MASK
#define	LONGEST_FUNC_TYPESTR strlen(FUNC_PT_STR)
#define	AFNI_FIRST_STATCODE FUNC_COR_TYPE
#define	AFNI_LAST_STATCODE FUNC_PT_TYPE
#define	FIMTHR 0
#define	FUNC_HAVE_FIM(ftyp)
#define	FUNC_HAVE_THR(ftyp)
#define	FUNC_IS_STAT(ftyp) ((ftyp) >= FIRST_STAT_TYPE && (ftyp) <= LAST_STAT_TYPE)
#define	FUNC_HAVE_PVAL FUNC_IS_STAT
#define	MAX_STAT_AUX 64
#define	ANAT_SPGR_TYPE 0
#define	ANAT_SPGR_STR "Spoiled GRASS"
#define	ANAT_SPGR_PREFIX "spgr"
#define	ANAT_SPGR_MASK (1 << ANAT_SPGR_TYPE)
#define	ANAT_FSE_TYPE 1
#define	ANAT_FSE_STR "Fast Spin Echo"
#define	ANAT_FSE_PREFIX "fse"
#define	ANAT_FSE_MASK (1 << ANAT_FSE_TYPE)
#define	ANAT_EPI_TYPE 2
#define	ANAT_EPI_STR "Echo Planar"
#define	ANAT_EPI_PREFIX "epan"
#define	ANAT_EPI_MASK (1 << ANAT_EPI_TYPE)
#define	ANAT_MRAN_TYPE 3
#define	ANAT_MRAN_STR "MRI Anatomy"
#define	ANAT_MRAN_PREFIX "anat"
#define	ANAT_MRAN_MASK (1 << ANAT_MRAN_TYPE)
#define	ANAT_CT_TYPE 4
#define	ANAT_CT_STR "CT Scan"
#define	ANAT_CT_PREFIX "ct"
#define	ANAT_CT_MASK (1 << ANAT_CT_TYPE)
#define	ANAT_SPECT_TYPE 5
#define	ANAT_SPECT_STR "SPECT Anatomy"
#define	ANAT_SPECT_PREFIX "spct"
#define	ANAT_SPECT_MASK (1 << ANAT_SPECT_TYPE)
#define	ANAT_PET_TYPE 6
#define	ANAT_PET_STR "PET Anatomy"
#define	ANAT_PET_PREFIX "pet"
#define	ANAT_PET_MASK (1 << ANAT_PET_TYPE)
#define	ANAT_MRA_TYPE 7
#define	ANAT_MRA_STR "MR Angiography"
#define	ANAT_MRA_PREFIX "mra"
#define	ANAT_MRA_MASK (1 << ANAT_MRA_TYPE)
#define	ANAT_BMAP_TYPE 8
#define	ANAT_BMAP_STR "B-field Map"
#define	ANAT_BMAP_PREFIX "bmap"
#define	ANAT_BMAP_MASK (1 << ANAT_BMAP_TYPE)
#define	ANAT_DIFF_TYPE 9
#define	ANAT_DIFF_STR "Diffusion Map"
#define	ANAT_DIFF_PREFIX "diff"
#define	ANAT_DIFF_MASK (1 << ANAT_DIFF_TYPE)
#define	ANAT_OMRI_TYPE 10
#define	ANAT_OMRI_STR "Other MRI"
#define	ANAT_OMRI_PREFIX "omri"
#define	ANAT_OMRI_MASK (1 << ANAT_OMRI_TYPE)
#define	ANAT_BUCK_TYPE 11
#define	ANAT_BUCK_STR "Anat Bucket"
#define	ANAT_BUCK_PREFIX "abuc"
#define	ANAT_BUCK_MASK (1 << ANAT_BUCK_TYPE)
#define	ANAT_MAPC_TYPE 12
#define	ANAT_MAPC_STR "Mapped Color"
#define	ANAT_MAPC_PREFIX "mapc"
#define	ANAT_MAPC_MASK (1 << ANAT_MAPC_TYPE)
#define	FIRST_ANAT_TYPE 0
#define	LAST_ANAT_TYPE 11
#define	ANAT_ALL_MASK
#define	NUM_DSET_TYPES (LAST_FUNC_TYPE + LAST_ANAT_TYPE + 2)
#define	LONGEST_ANAT_TYPESTR strlen(ANAT_MRA_STR)
#define	DSET_PREFIXSTR(ds)
#define	DSET_FUNCLABEL(ds)
#define	DSET_TYPESTR(ds)
#define	DOOMED 665
#define	DSET_MARK_FOR_DEATH(ds) do{ if( ISVALID_DSET(ds) && ds->death_mark >= 0 ) ds->death_mark = DOOMED ; } while(0)
#define	DSET_MARK_FOR_IMMORTALITY(ds) do{ if( ISVALID_DSET(ds) ) ds->death_mark = -1 ; } while(0)
#define	DSET_MARK_FOR_NORMAL(ds) do{ if( ISVALID_DSET(ds) ) ds->death_mark = 0 ; } while(0)
#define	DSET_IS_TCAT(ds) (ISVALID_DSET(ds) && (ds)->tcat_list != NULL)
#define	CURRENT_DAXES(ds) (((ds)->wod_flag) ? ((ds)->wod_daxes) : ((ds)->daxes))
#define	ISVALID_3DIM_DATASET(ds)
#define	ISVALID_DSET ISVALID_3DIM_DATASET
#define	ISFUNCTYPE(nn) ( (nn) == HEAD_FUNC_TYPE \|\| (nn) == GEN_FUNC_TYPE )
#define	ISFUNC(dset) ( ISVALID_DSET(dset) && ISFUNCTYPE((dset)->type) )
#define	ISANATTYPE(nn) ( (nn) == HEAD_ANAT_TYPE \|\| (nn) == GEN_ANAT_TYPE )
#define	ISANAT(dset) ( ISVALID_DSET(dset) && ISANATTYPE((dset)->type) )
#define	ISHEADTYPE(nn) ( (nn) == HEAD_ANAT_TYPE \|\| (nn) == HEAD_FUNC_TYPE )
#define	ISHEAD(dset) ( ISVALID_DSET(dset) && ISHEADTYPE((dset)->type) )
#define	ISANATBUCKET(dset) ( ISANAT(dset) && (dset)->func_type == ANAT_BUCK_TYPE )
#define	ISFUNCBUCKET(dset) ( ISFUNC(dset) && (dset)->func_type == FUNC_BUCK_TYPE )
#define	ISBUCKET(dset) ( ISANATBUCKET(dset) \|\| ISFUNCBUCKET(dset) )
#define	DSET_ONDISK(ds)
#define	DSET_IS_BRIK(ds)
#define	DBLK_IS_MINC(db)
#define	DSET_IS_MINC(ds)
#define	DBLK_IS_ANALYZE(db)
#define	DSET_IS_ANALYZE(ds)
#define	DBLK_IS_CTFMRI(db)
#define	DSET_IS_CTFMRI(ds)
#define	DBLK_IS_CTFSAM(db)
#define	DSET_IS_CTFSAM(ds)
#define	DBLK_IS_1D(db)
#define	DBLK_IS_3D(db)
#define	DBLK_IS_NIFTI(db)
#define	DSET_IS_1D(ds)
#define	DSET_IS_3D(ds)
#define	DSET_IS_NIFTI(ds)
#define	DBLK_IS_VOLUMES(db)
#define	DSET_IS_VOLUMES(ds)
#define	DBLK_IS_MPEG(db)
#define	DSET_IS_MPEG(ds)
#define	DSET_WRITEABLE(ds)
#define	DSET_COMPRESSED(ds)
#define	PURGE_DSET(ds)
#define	DSET_INMEMORY(ds)
#define	DBLK_BRICK(db, iv) ((db)->brick->imarr[(iv)])
#define	DSET_BRICK(ds, iv) DBLK_BRICK((ds)->dblk,(iv))
#define	DBLK_BRICK_TYPE(db, iv) (DBLK_BRICK((db),(iv))->kind)
#define	DSET_BRICK_TYPE(ds, iv) DBLK_BRICK_TYPE((ds)->dblk,(iv))
#define	DBLK_BRICK_NVOX(db, iv) (DBLK_BRICK((db),(iv))->nvox)
#define	DBLK_ARRAY(db, iv) mri_data_pointer( DBLK_BRICK((db),(iv)) )
#define	DSET_ARRAY(ds, iv) DBLK_ARRAY((ds)->dblk,(iv))
#define	DSET_BRICK_ARRAY DSET_ARRAY
#define	DBLK_BRICK_ARRAY DBLK_ARRAY
#define	DBLK_BRICK_FACTOR(db, iv) ((db)->brick_fac[(iv)])
#define	DSET_BRICK_FACTOR(ds, iv) DBLK_BRICK_FACTOR((ds)->dblk,(iv))
#define	DBLK_BRICK_BYTES(db, iv) ((db)->brick_bytes[iv])
#define	DSET_BRICK_BYTES(ds, iv) DBLK_BRICK_BYTES((ds)->dblk,(iv))
#define	DSET_PRINCIPAL_VALUE(ds)
#define	DSET_PRINCIPAL_INDEX DSET_PRINCIPAL_VALUE
#define	DSET_THRESH_VALUE(ds) (ISANAT((ds)) ? -1 : FUNC_ival_thr[(ds)->func_type])
#define	DSET_THRESH_INDEX DSET_THRESH_VALUE
#define	DSET_PREFIX(ds)
#define	DSET_FILECODE(ds)
#define	DSET_HEADNAME(ds)
#define	DSET_BRIKNAME(ds)
#define	DSET_BRICKNAME DSET_BRIKNAME
#define	DSET_DIRNAME(ds)
#define	DSET_SESSNAME DSET_DIRNAME
#define	DSET_IDCODE(ds) (&((ds)->idcode))
#define	DSET_IDCODE_STR(ds) ((ds)->idcode.str)
#define	DBLK_BYTEORDER(db) ((db)->diskptr->byte_order)
#define	DSET_BYTEORDER(ds) DBLK_BYTEORDER((ds)->dblk)
#define	DSET_NUM_TIMES(ds) ( ((ds)->taxis == NULL) ? 1 : (ds)->taxis->ntt )
#define	HAS_TIMEAXIS(ds) ( DSET_NUM_TIMES(ds) > 1 )
#define	DSET_NVALS_PER_TIME(ds) ( (ds)->dblk->nvals / DSET_NUM_TIMES(ds) )
#define	DSET_NVALS(ds) ( (ds)->dblk->nvals )
#define	DSET_NVOX(ds) ( (ds)->daxes->nxx * (ds)->daxes->nyy * (ds)->daxes->nzz )
#define	DSET_NX(ds) ((ds)->daxes->nxx)
#define	DSET_NY(ds) ((ds)->daxes->nyy)
#define	DSET_NZ(ds) ((ds)->daxes->nzz)
#define	DSET_DX(ds) ((ds)->daxes->xxdel)
#define	DSET_DY(ds) ((ds)->daxes->yydel)
#define	DSET_DZ(ds) ((ds)->daxes->zzdel)
#define	DSET_XORG(ds) ((ds)->daxes->xxorg)
#define	DSET_YORG(ds) ((ds)->daxes->yyorg)
#define	DSET_ZORG(ds) ((ds)->daxes->zzorg)
#define	DSET_XXMIN(ds) ((ds)->daxes->xxmin)
#define	DSET_XXMAX(ds) ((ds)->daxes->xxmax)
#define	DSET_YYMIN(ds) ((ds)->daxes->yymin)
#define	DSET_YYMAX(ds) ((ds)->daxes->yymax)
#define	DSET_ZZMIN(ds) ((ds)->daxes->zzmin)
#define	DSET_ZZMAX(ds) ((ds)->daxes->zzmax)
#define	DSET_index_to_ix(ds, ii) ( (ii) % (ds)->daxes->nxx)
#define	DSET_index_to_jy(ds, ii) ( ((ii) / (ds)->daxes->nxx) % (ds)->daxes->nyy )
#define	DSET_index_to_kz(ds, ii) ( (ii) /((ds)->daxes->nxx * (ds)->daxes->nyy ))
#define	DSET_ixyz_to_index(ds, ix, jy, kz) ((ix)+((jy)+(kz)(ds)->daxes->nyy)(ds)->daxes->nxx)
#define	DSET_CUBICAL(ds)
#define	DSET_GRAPHABLE(ds)
#define	DSET_TIMESTEP(ds) ( ((ds)->taxis == NULL) ? 0.0 : (ds)->taxis->ttdel )
#define	DSET_TR DSET_TIMESTEP
#define	DSET_TIMEORIGIN(ds) ( ((ds)->taxis == NULL) ? 0.0 : (ds)->taxis->ttorg )
#define	DSET_TIMEDURATION(ds) ( ((ds)->taxis == NULL) ? 0.0 : (ds)->taxis->ttdur )
#define	DSET_TIMEUNITS(ds)
#define	DSET_NUM_TTOFF(ds) ( ((ds)->taxis == NULL) ? 0 : (ds)->taxis->nsl )
#define	DBLK_BRICK_LAB(db, iv) ( ((db)->brick_lab != NULL) ? ((db)->brick_lab[iv]) : "?" )
#define	DSET_BRICK_LAB(ds, iv) DBLK_BRICK_LAB((ds)->dblk,(iv))
#define	DSET_BRICK_LABEL DSET_BRICK_LAB
#define	DBLK_BRICK_STATCODE(db, iv) ( ((db)->brick_statcode != NULL) ? (db)->brick_statcode[iv] : ILLEGAL_TYPE )
#define	DSET_BRICK_STATCODE(ds, iv)
#define	DBLK_BRICK_STATAUX(db, iv) ( ((db)->brick_stataux != NULL) ? (db)->brick_stataux[iv] : NULL )
#define	DSET_BRICK_STATAUX(ds, iv)
#define	DBLK_BRICK_STATPAR(db, iv, jj) ( ((db)->brick_stataux != NULL) ? (db)->brick_stataux[iv][jj] : 0.0 )
#define	DSET_BRICK_STATPAR(ds, iv, jj)
#define	DBLK_BRICK_KEYWORDS(db, iv) ( ((db)->brick_keywords != NULL) ? ((db)->brick_keywords[iv]) : NULL )
#define	DSET_BRICK_KEYWORDS(ds, iv) DBLK_BRICK_KEYWORDS((ds)->dblk,(iv))
#define	DSET_KEYWORDS(ds) ((ds)->keywords)
#define	DSET_BRICK_KEYWORDS_HAS(ds, iv, ss) THD_string_has( DSET_BRICK_KEYWORDS((ds),(iv)) , (ss) )
#define	DSET_KEYWORDS_HAS(ds, ss) THD_string_has( DSET_KEYWORDS((ds)) , (ss) )
#define	DSET_FIX_NAMES(ds)
#define	RELOAD_STATS(dset)
#define	DSET_VALID_BSTAT(dset, ii)
#define	DSET_CRUSH_BSTAT(dset, ii)
#define	DSET_KILL_STATS(ds)
#define	INIT_STAT_AUX(ds, nf, ff)
#define	ZERO_STAT_AUX(ds)
#define	DSET_load(ds) THD_load_datablock( (ds)->dblk )
#define	DSET_unload(ds) THD_purge_datablock( (ds)->dblk , DATABLOCK_MEM_ANY )
#define	DSET_unload_one(ds, iv) THD_purge_one_brick( (ds)->dblk , (iv) )
#define	DSET_delete(ds) THD_delete_3dim_dataset((ds),False)
#define	DSET_write(ds)
#define	DSET_write_header(ds) THD_write_3dim_dataset( NULL,NULL , (ds),False )
#define	DSET_LOADED(ds) ( THD_count_databricks((ds)->dblk) == DSET_NVALS(ds) )
#define	DSET_lock(ds) DBLK_lock((ds)->dblk)
#define	DSET_unlock(ds) DBLK_unlock((ds)->dblk)
#define	DSET_LOCKED(ds) DBLK_LOCKED((ds)->dblk)
#define	DSET_mallocize(ds) DBLK_mallocize((ds)->dblk)
#define	DSET_mmapize(ds) DBLK_mmapize((ds)->dblk)
#define	DSET_shareize(ds) DBLK_shareize((ds)->dblk)
#define	DSET_anyize(ds) DBLK_anyize((ds)->dblk)
#define	DSET_superlock(ds) DBLK_superlock((ds)->dblk)
#define	DSET_IS_MALLOC(ds) DBLK_IS_MALLOC((ds)->dblk)
#define	DSET_IS_MMAP(ds) DBLK_IS_MMAP((ds)->dblk)
#define	DSET_IS_SHARED(ds) DBLK_IS_SHARED((ds)->dblk)
#define	DSET_IS_MASTERED(ds) DBLK_IS_MASTERED((ds)->dblk)
#define	TWOGIG 2147000000
#define	DBLK_mmapfix(db)
#define	INC_3DARR 8
#define	INIT_3DARR(name)
#define	ADDTO_3DARR(name, ddset)
#define	FREE_3DARR(name)
#define	DSET_IN_3DARR(name, nn) ((name)->ar[(nn)])
#define	DSET_ORDERED(d1, d2)
#define	DSET_SWAP(d1, d2) (dt=(d1),(d1)=(d2),(d2)=dt)
#define	SORT_3DARR(name)
#define	SESSION_TYPE 97
#define	ISVALID_SESSION(ss) ( (ss) != NULL && (ss)->type == SESSION_TYPE )
#define	BLANK_SESSION(ss)
#define	SESSION_HAS_SUMA(ss)
#define	SESSIONLIST_TYPE 107
#define	ISVALID_SESSIONLIST(sl) ( (sl)!=NULL && (sl)->type==SESSIONLIST_TYPE )
#define	BLANK_SESSIONLIST(sl)
#define	BADFIND(ff)
#define	FIND_NAME 1
#define	FIND_IDCODE 2
#define	FIND_PREFIX 3
#define	ATRNAME_DATANAME "DATASET_NAME"
#define	ATRNAME_LABEL1 "LABEL_1"
#define	ATRNAME_LABEL2 "LABEL_2"
#define	ATRNAME_ANATOMY_PARENT "ANATOMY_PARENTNAME"
#define	ATRNAME_ORIENT_SPECIFIC "ORIENT_SPECIFIC"
#define	ATRTYPE_ORIENT_SPECIFIC ATR_INT_TYPE
#define	ATRSIZE_ORIENT_SPECIFIC 3
#define	ATRNAME_ORIENT_GENERAL "ORIENT_GENERAL" /* not used yet */
#define	ATRTYPE_ORIENT_GENERAL ATR_FLOAT_TYPE
#define	ATRSIZE_ORIENT_GENERAL 9
#define	ATRNAME_ORIGIN "ORIGIN"
#define	ATRTYPE_ORIGIN ATR_FLOAT_TYPE
#define	ATRSIZE_ORIGIN 3
#define	ATRNAME_DELTA "DELTA"
#define	ATRTYPE_DELTA ATR_FLOAT_TYPE
#define	ATRSIZE_DELTA 3
#define	ATRNAME_SKIP "SKIP"
#define	ATRTYPE_SKIP ATR_FLOAT_TYPE
#define	ATRSIZE_SKIP 3
#define	ATRNAME_MARKSXYZ "MARKS_XYZ"
#define	ATRTYPE_MARKSXYZ ATR_FLOAT_TYPE
#define	ATRSIZE_MARKSXYZ MARKS_FSIZE
#define	ATRNAME_MARKSLAB "MARKS_LAB"
#define	ATRTYPE_MARKSLAB ATR_STRING_TYPE
#define	ATRSIZE_MARKSLAB MARKS_LSIZE
#define	ATRNAME_MARKSHELP "MARKS_HELP"
#define	ATRTYPE_MARKSHELP ATR_STRING_TYPE
#define	ATRSIZE_MARKSHELP MARKS_HSIZE
#define	ATRNAME_MARKSFLAG "MARKS_FLAGS"
#define	ATRTYPE_MARKSFLAG ATR_INT_TYPE
#define	ATRSIZE_MARKSFLAG MARKS_MAXFLAG
#define	ATRNAME_TYPESTRING "TYPESTRING"
#define	ATRTYPE_TYPESTRING ATR_STRING_TYPE
#define	ATRSIZE_TYPESTRING 0
#define	ATRNAME_WARP_TYPE "WARP_TYPE"
#define	ATRTYPE_WARP_TYPE ATR_INT_TYPE
#define	ATRSIZE_WARP_TYPE 8
#define	ATRNAME_WARP_DATA "WARP_DATA"
#define	ATRTYPE_WARP_DATA ATR_FLOAT_TYPE
#define	ATRSIZE_WARP_DATA 0
#define	ATRNAME_WARP_PARENT "WARP_PARENTNAME"
#define	ATRTYPE_WARP_PARENT ATR_STRING_TYPE
#define	ATRSIZE_WARP_PARENT 0
#define	ATRNAME_SCENE_TYPE "SCENE_DATA"
#define	ATRTYPE_SCENE_TYPE ATR_INT_TYPE
#define	ATRSIZE_SCENE_TYPE 8
#define	ATRNAME_DATASET_RANK "DATASET_RANK"
#define	ATRTYPE_DATASET_RANK ATR_INT_TYPE
#define	ATRSIZE_DATASET_RANK 8
#define	ATRNAME_DATASET_DIMENSIONS "DATASET_DIMENSIONS"
#define	ATRTYPE_DATASET_DIMENSIONS ATR_INT_TYPE
#define	ATRSIZE_DATASET_DIMENSIONS THD_MAX_RANK_EVER
#define	ATRNAME_MINMAX "MINMAX"
#define	ATRTYPE_MINMAX ATR_INT_TYPE
#define	ATRNAME_BRICK_TYPES "BRICK_TYPES"
#define	ATRTYPE_BRICK_TYPES ATR_INT_TYPE
#define	ATRSIZE_BRICK_TYPES 0
#define	ATRNAME_BRICK_STATS "BRICK_STATS"
#define	ATRTYPE_BRICK_STATS ATR_FLOAT_TYPE
#define	ATRSIZE_BRICK_STATS 0
#define	ATRNAME_BRICK_FLTFAC "BRICK_FLOAT_FACS"
#define	ATRTYPE_BRICK_FLTFAC ATR_FLOAT_TYPE
#define	ATRSIZE_BRICK_FLTFAC 0
#define	ATRNAME_STAT_AUX "STAT_AUX"
#define	ATRTYPE_STAT_AUX ATR_FLOAT_TYPE
#define	ATRSIZE_STAT_AUX 0
#define	ATRNAME_TAXIS_NUMS "TAXIS_NUMS"
#define	ATRSIZE_TAXIS_NUMS 8
#define	ATRNAME_TAXIS_FLOATS "TAXIS_FLOATS"
#define	ATRSIZE_TAXIS_FLOATS 8
#define	ATRNAME_TAXIS_OFFSETS "TAXIS_OFFSETS"
#define	ATRSIZE_TAXIS_OFFSETS 0
#define	ATRNAME_BRICK_LABS "BRICK_LABS"
#define	ATRNAME_BRICK_STATAUX "BRICK_STATAUX"
#define	ATRNAME_BRICK_KEYWORDS "BRICK_KEYWORDS"
#define	ATRNAME_KEYWORDS "DATASET_KEYWORDS"
#define	THD_set_string_atr(blk, name, str) THD_set_char_atr( (blk) , (name) , strlen(str)+1 , (str) )
#define	MASTER_SHORTHELP_STRING
#define	MASTER_HELP_STRING
#define	CALC_HELP_STRING
#define	TS_HELP_STRING
#define	OKHOST(hh) TRUST_host(hh) ;
#define	DSET_datum_constant(ds) THD_datum_constant((ds)->dblk)
#define	ALLOW_FSL_FEAT
#define	MINC_FLOATIZE_MASK 1
#define	MISMATCH_CENTER (1<<0)
#define	MISMATCH_DELTA (1<<1)
#define	MISMATCH_ORIENT (1<<2)
#define	MISMATCH_DIMEN (1<<3)
#define	ROT3(a, b, c, na, nb, nc) ((na)=(b),(nb)=(c),(nc)=(a))
#define	BRICK_DRAWABLE(br) ((br)->n1 > 1 && (br)->n2 > 1)
#define	BRICK_GRAPHABLE(br) ((br)->n1 >= 1 && (br)->n2 >= 1)
#define	DETREND_linear(n, f) THD_linear_detrend(n,f,NULL,NULL)
#define	DETREND_quadratic(n, f) THD_quadratic_detrend(n,f,NULL,NULL,NULL)
#define	DETREND_cubic(n, f) THD_cubic_detrend(n,f)
#define	DETREND_const(n, f) THD_const_detrend(n,f,NULL)
#define	DETREND_polort(p, n, f)
#define	DELTA_AFTER 1
#define	DELTA_BEFORE 2
#define	DELTA_FIXED 3
#define	TM_IXY 2
#define	TM_IYZ 0
#define	TM_IZX 1
#define	TM_ZLINE(tm, i) (tm==NULL \|\| tm->mask[TM_IXY][i])
#define	TM_YLINE(tm, i) (tm==NULL \|\| tm->mask[TM_IZX][i])
#define	TM_XLINE(tm, i) (tm==NULL \|\| tm->mask[TM_IYZ][i])
#define	ZPAD_EMPTY (1<<0)
#define	ZPAD_PURGE (1<<1)
#define	ZPAD_MM (1<<2)
#define	WARP3D_NEWGRID 1
#define	WARP3D_NEWDSET 2
#define	WARP3D_GRIDMASK 7
#define	MAX_DSET_NOTES 999
#define	MAX_NOTE_SIZE 4000
#define	AFNI_log_string(ss) AFNI_logger(ss,0,NULL)
#define	tross_Erase_History(ds) THD_erase_one_atr((ds)->dblk,"HISTORY_NOTE")
#define	TT_ATLAS_NZ_SMALL 141
#define	TT_ATLAS_NZ_BIG 151
#define	TT_retrieve_atlas_nz(nz)
#define	SBFLAG_INDEX (1<<0)
#define	SBFLAG_FACTOR (1<<1)
#define	SBFLAG_STATCODE (1<<2)
Typedefs
typedef void	generic_func ()
typedef float	float_func ()
typedef THD_3dim_dataset	THD_3dim_dataset
typedef THD_3dim_dataset_array	THD_3dim_dataset_array
typedef FD_brick	FD_brick
Functions
int	SARR_find_string (THD_string_array sar, char str)
int	SARR_find_substring (THD_string_array sar, char sub)
int	SARR_lookfor_string (THD_string_array sar, char str, int nstart)
int	SARR_lookfor_substring (THD_string_array sar, char sub, int nstart)
void	THD_zblock (int, char *)
void	THD_unzblock (int, char *)
void	THD_delete_diskptr (THD_diskptr *)
void	THD_delete_datablock (THD_datablock *)
void	THD_init_datablock_brick (THD_datablock , int, void )
void	THD_init_datablock_labels (THD_datablock *)
void	THD_init_datablock_keywords (THD_datablock *)
void	THD_copy_datablock_auxdata (THD_datablock , THD_datablock )
void	THD_init_datablock_stataux (THD_datablock *)
void	THD_store_datablock_stataux (THD_datablock , int, int, int, float )
void	THD_store_datablock_label (THD_datablock , int, char )
void	THD_store_datablock_keywords (THD_datablock , int, char )
void	THD_append_datablock_keywords (THD_datablock , int, char )
int	THD_datablock_from_atr (THD_datablock , char , char *)
int	THD_string_has (char , char )
void	THD_edit_dataxes (float, THD_dataxes , THD_dataxes )
int	THD_get_axis_direction (THD_dataxes *, int)
void	MCW_hash_idcode (char , struct THD_3dim_dataset )
void	THD_coorder_fill (char , THD_coorder )
void	THD_dicom_to_coorder (THD_coorder , float , float , float )
void	THD_coorder_to_dicom (THD_coorder , float , float , float )
int	THD_need_brick_factor (THD_3dim_dataset *)
char *	THD_newprefix (THD_3dim_dataset dset, char suffix)
char *	THD_deplus_prefix (char *prefix)
char *	ig_strstr (char , char , char *)
void	freeup_strings (int n, char **sar)
int	breakup_string (char sin, char **stok)
THD_string_array *	THD_get_all_filenames (char *)
THD_string_array *	THD_extract_regular_files (THD_string_array *)
THD_string_array *	THD_extract_directories (THD_string_array *)
int	THD_is_file (char *)
int	THD_is_symlink (char *)
int	THD_is_directory (char *)
int	THD_is_ondisk (char *)
int	THD_mkdir (char *)
int	THD_cwd (char *)
int	THD_equiv_files (char , char )
unsigned long	THD_filesize (char *pathname)
THD_string_array *	THD_get_all_subdirs (int, char *)
THD_string_array *	THD_normalize_flist (THD_string_array *)
THD_string_array *	THD_get_wildcard_filenames (char *)
time_t	THD_file_mtime (char *)
THD_string_array *	THD_get_all_executables (char *)
THD_string_array *	THD_getpathprogs (THD_string_array *)
int	THD_is_executable (char *pathname)
char *	THD_find_executable (char *)
int	THD_is_dataset (char , char , int)
char *	THD_dataset_headname (char , char , int)
MRI_IMARR *	THD_get_all_timeseries (char *)
MRI_IMARR *	THD_get_many_timeseries (THD_string_array *)
char *	THD_trailname (char *fname, int lev)
int	THD_linecount (char *)
void	THD_read_all_atr (char , THD_datablock )
void	THD_erase_all_atr (THD_datablock *)
void	THD_erase_one_atr (THD_datablock , char )
void	THD_read_niml_atr (char , THD_datablock )
void	THD_anonymize_dset (THD_3dim_dataset *)
void	THD_anonymize_write (int)
ATR_any *	THD_find_atr (THD_datablock , char )
ATR_float *	THD_find_float_atr (THD_datablock , char )
ATR_int *	THD_find_int_atr (THD_datablock , char )
ATR_string *	THD_find_string_atr (THD_datablock , char )
void	THD_set_atr (THD_datablock , char , int, int, void *)
ATR_any *	THD_copy_atr (ATR_any *atr)
void	THD_insert_atr (THD_datablock blk, ATR_any atr)
void	THD_store_dataset_keywords (THD_3dim_dataset , char )
void	THD_append_dataset_keywords (THD_3dim_dataset , char )
char *	THD_dataset_info (THD_3dim_dataset *, int)
char *	THD_zzprintf (char sss, char fmt,...)
void	THD_set_float_atr (THD_datablock , char , int, float *)
void	THD_set_int_atr (THD_datablock , char , int, int *)
void	THD_set_char_atr (THD_datablock , char , int, char *)
void	THD_init_diskptr_names (THD_diskptr , char , char , char , int, Boolean)
THD_datablock *	THD_init_one_datablock (char , char )
THD_datablock_array *	THD_init_prefix_datablocks (char , THD_string_array )
XtPointer_array *	THD_init_alldir_datablocks (char *)
THD_session *	THD_init_session (char *)
void	THD_order_session (THD_session *)
THD_3dim_dataset *	THD_open_one_dataset (char *)
THD_3dim_dataset *	THD_open_dataset (char *)
THD_3dim_dataset *	THD_open_minc (char *)
THD_3dim_dataset *	THD_open_analyze (char *)
THD_3dim_dataset *	THD_open_ctfmri (char *)
THD_3dim_dataset *	THD_open_ctfsam (char *)
THD_3dim_dataset *	THD_open_1D (char *)
THD_3dim_dataset *	THD_open_3D (char *)
THD_3dim_dataset *	THD_open_nifti (char *)
THD_3dim_dataset *	THD_open_mpeg (char *)
THD_3dim_dataset *	THD_open_tcat (char *)
void	THD_datablock_apply_atr (THD_3dim_dataset *)
THD_3dim_dataset *	THD_fetch_dataset (char *)
XtPointer_array *	THD_fetch_many_datasets (char *)
MRI_IMAGE *	THD_fetch_1D (char *)
void	THD_set_storage_mode (THD_3dim_dataset *, int)
int *	MCW_get_intlist (int, char *)
void	MCW_intlist_allow_negative (int)
THD_3dim_dataset *	THD_copy_dset_subs (THD_3dim_dataset , int )
void	THD_delete_3dim_dataset (THD_3dim_dataset *, Boolean)
THD_3dim_dataset *	THD_3dim_from_block (THD_datablock *)
void	THD_allow_empty_dataset (int)
THD_3dim_dataset_array *	THD_array_3dim_from_block (THD_datablock_array *blk_arr)
Boolean	THD_write_3dim_dataset (char , char , THD_3dim_dataset *, Boolean)
void	THD_use_3D_format (int)
void	THD_use_NIFTI_format (int)
Boolean	THD_write_datablock (THD_datablock *, Boolean)
Boolean	THD_write_atr (THD_datablock *)
Boolean	THD_write_nimlatr (THD_datablock *)
void	THD_set_write_compression (int mm)
int	THD_enviro_write_compression (void)
int	THD_get_write_compression (void)
void	THD_set_write_order (int)
void	THD_enviro_write_order (void)
int	THD_get_write_order (void)
int	TRUST_host (char *)
void	TRUST_addhost (char *)
Boolean	THD_load_datablock (THD_datablock *)
void	THD_load_datablock_verbose (int)
void	THD_set_freeup (generic_func *)
Boolean	THD_purge_datablock (THD_datablock *, int)
Boolean	THD_purge_one_brick (THD_datablock *, int)
void	THD_force_malloc_type (THD_datablock *, int)
int	THD_count_databricks (THD_datablock *dblk)
void	THD_load_minc (THD_datablock *)
void	THD_load_analyze (THD_datablock *)
void	THD_load_ctfmri (THD_datablock *)
void	THD_load_ctfsam (THD_datablock *)
void	THD_load_1D (THD_datablock *)
void	THD_load_3D (THD_datablock *)
void	THD_load_nifti (THD_datablock *)
void	THD_load_mpeg (THD_datablock *)
void	THD_load_tcat (THD_datablock *)
void	THD_zerofill_dataset (THD_3dim_dataset *)
int	THD_datum_constant (THD_datablock *)
int	THD_write_minc (char , THD_3dim_dataset , int)
void	THD_write_1D (char , char , THD_3dim_dataset *)
void	THD_write_3D (char , char , THD_3dim_dataset *)
void	THD_reconcile_parents (THD_sessionlist *)
THD_slist_find	THD_dset_in_sessionlist (int, void , THD_sessionlist , int)
THD_slist_find	THD_dset_in_session (int, void , THD_session )
void	THD_check_idcodes (THD_sessionlist *)
void	THD_load_statistics (THD_3dim_dataset *)
void	THD_update_statistics (THD_3dim_dataset *)
void	THD_update_one_bstat (THD_3dim_dataset *, int)
THD_fvec3	THD_3dind_to_3dmm (THD_3dim_dataset *, THD_ivec3)
THD_fvec3	THD_3dind_to_3dmm_no_wod (THD_3dim_dataset *, THD_ivec3)
THD_ivec3	THD_3dmm_to_3dind (THD_3dim_dataset *, THD_fvec3)
THD_ivec3	THD_3dmm_to_3dind_no_wod (THD_3dim_dataset *, THD_fvec3)
THD_fvec3	THD_3dfind_to_3dmm (THD_3dim_dataset *, THD_fvec3)
THD_fvec3	THD_3dmm_to_3dfind (THD_3dim_dataset *, THD_fvec3)
THD_fvec3	THD_3dmm_to_dicomm (THD_3dim_dataset *, THD_fvec3)
THD_fvec3	THD_dicomm_to_3dmm (THD_3dim_dataset *, THD_fvec3)
THD_fvec3	THD_tta_to_mni (THD_fvec3)
THD_fvec3	THD_mni_to_tta (THD_fvec3)
void	THD_3mni_to_3tta (float , float , float *)
void	THD_3tta_to_3mni (float , float , float *)
float	THD_timeof (int, float, THD_timeaxis *)
float	THD_timeof_vox (int, int, THD_3dim_dataset *)
float	THD_timeof_slice (int, int, THD_3dim_dataset *)
int	THD_dataset_mismatch (THD_3dim_dataset , THD_3dim_dataset )
int	THD_dataset_tshift (THD_3dim_dataset *, int)
FD_brick *	THD_3dim_dataset_to_brick (THD_3dim_dataset *, int, int, int)
MRI_IMAGE *	FD_brick_to_mri (int, int, FD_brick *br)
MRI_IMAGE *	FD_brick_to_series (int, FD_brick *br)
float	THD_get_voxel (THD_3dim_dataset *dset, int ijk, int ival)
MRI_IMAGE *	THD_extract_series (int, THD_3dim_dataset *, int)
MRI_IMARR *	THD_extract_many_series (int, int , THD_3dim_dataset )
int	THD_extract_array (int, THD_3dim_dataset , int, void )
MRI_IMAGE *	THD_extract_float_brick (int, THD_3dim_dataset *)
void	THD_insert_series (int, THD_3dim_dataset , int, int, void , int)
void	get_linear_trend (int, float , float , float *)
void	THD_linear_detrend (int, float , float , float *)
void	get_quadratic_trend (int, float , float , float , float )
void	THD_quadratic_detrend (int, float , float , float , float )
void	THD_normalize (int, float *)
void	THD_cubic_detrend (int, float *)
void	THD_const_detrend (int, float , float )
void	THD_generic_detrend (int, float , int, int, float *)
THD_ivec3	THD_fdind_to_3dind (FD_brick *, THD_ivec3)
THD_ivec3	THD_3dind_to_fdind (FD_brick *, THD_ivec3)
THD_fvec3	THD_fdfind_to_3dfind (FD_brick *, THD_fvec3)
THD_fvec3	THD_3dfind_to_fdfind (FD_brick *, THD_fvec3)
FD_brick **	THD_setup_bricks (THD_3dim_dataset *)
FD_brick *	THD_oriented_brick (THD_3dim_dataset , char )
int	thd_floatscan (int, float *)
int	thd_complexscan (int, complex *)
byte *	THD_makemask (THD_3dim_dataset *, int, float, float)
int	THD_countmask (int, byte *)
byte *	THD_automask (THD_3dim_dataset *)
void	THD_automask_verbose (int)
void	THD_automask_extclip (int)
byte *	mri_automask_image (MRI_IMAGE *)
byte *	mri_automask_imarr (MRI_IMARR *)
void	THD_autobbox (THD_3dim_dataset , int , int , int , int , int , int *)
void	MRI_autobbox (MRI_IMAGE , int , int , int , int , int , int *)
int	THD_mask_fillin_completely (int, int, int, byte *, int)
int	THD_mask_fillin_once (int, int, int, byte *, int)
int	THD_mask_clip_neighbors (int, int, int, byte , float, float, float )
void	THD_mask_clust (int nx, int ny, int nz, byte *mmm)
void	THD_mask_erode (int nx, int ny, int nz, byte *mmm)
int	THD_peel_mask (int nx, int ny, int nz, byte *mmm, int pdepth)
void	THD_mask_dilate (int, int, int, byte *, int)
float	THD_cliplevel (MRI_IMAGE *, float)
MRI_IMAGE *	THD_median_brick (THD_3dim_dataset *)
MRI_IMAGE *	THD_mean_brick (THD_3dim_dataset *)
MRI_IMAGE *	THD_rms_brick (THD_3dim_dataset *)
int	THD_get_dset_rowcount (THD_3dim_dataset *, int)
void *	THD_get_dset_row (THD_3dim_dataset *, int, int, int, int, int)
void	THD_put_dset_row (THD_3dim_dataset , int, int, int, int, int, void row)
int	THD_dataset_rowfillin (THD_3dim_dataset *, int, int, int)
int	THD_dataset_zfillin (THD_3dim_dataset *, int, int, int)
void	THD_rotangle_user_to_dset (THD_3dim_dataset , float, char, float, char, float, char, float , int , float , int , float , int *)
int	THD_axcode (THD_3dim_dataset *, char)
int	THD_handedness (THD_3dim_dataset *)
THD_dvecmat	THD_rotcom_to_matvec (THD_3dim_dataset , char )
void	THD_rota_method (int)
void	THD_rota_setpad (int, int, int)
void	THD_rota_clearpad (void)
void	THD_rota_vol (int, int, int, float, float, float, float *, int, float, int, float, int, float, int, float, float, float)
MRI_IMAGE *	THD_rota3D (MRI_IMAGE *, int, float, int, float, int, float, int, float, float, float)
MRI_IMAGE *	THD_rota3D_matvec (MRI_IMAGE *, THD_dmat33, THD_dfvec3)
void	THD_rota_vol_matvec (int, int, int, float, float, float, float *, THD_dmat33, THD_dfvec3)
THD_dvecmat	DLSQ_rot_trans (int, THD_dfvec3 , THD_dfvec3 , double *)
THD_dvecmat	DLSQ_affine (int, THD_dfvec3 , THD_dfvec3 )
THD_dvecmat	DLSQ_rotscl (int, THD_dfvec3 , THD_dfvec3 , int)
THD_dvecmat	THD_read_dvecmat (char *, int)
void	free_Tmask (Tmask *)
Tmask *	create_Tmask_byte (int, int, int, byte *)
Tmask *	create_Tmask_rgba (int, int, int, rgba *)
void	THD_rota_vol_byte (int, int, int, float, float, float, byte , int, float, int, float, int, float, int, float, float, float, Tmask )
void	THD_rota_byte_mode (int)
void	THD_rota_vol_matvec_byte (int, int, int, float, float, float, byte , THD_mat33, THD_fvec3, Tmask )
void	SHIFT_set_method (int)
int	SHIFT_get_method (void)
void	SHIFT_two_rows (int, int, float, float , float, float )
void	fft_shift2 (int, int, float, float , float, float )
void	hept_shift2 (int, int, float, float , float, float )
void	quint_shift2 (int, int, float, float , float, float )
void	cub_shift2 (int, int, float, float , float, float )
void	lin_shift2 (int, int, float, float , float, float )
void	nn_shift2 (int, int, float, float , float, float )
void	ts_shift2 (int, int, float, float , float, float )
void	hept_shift (int, float, float *)
void	nn_shift (int, float, float *)
void	lin_shift (int, float, float *)
void	cub_shift (int, float, float *)
void	quint_shift (int, float, float *)
void	THD_fftshift (THD_3dim_dataset *, float, float, float, int)
void	mri_3dalign_edging (int, int, int)
void	mri_3dalign_edging_default (int, int, int)
void	mri_3dalign_force_edging (int)
void	mri_3dalign_wtrimming (int)
void	mri_3dalign_wproccing (int)
void	mri_3dalign_scaleinit (float)
void	mri_3dalign_params (int, float, float, float, int, int, int, int)
void	mri_3dalign_method (int, int, int, int)
void	mri_3dalign_final_regmode (int)
MRI_3dalign_basis *	mri_3dalign_setup (MRI_IMAGE , MRI_IMAGE )
MRI_IMAGE *	mri_3dalign_one (MRI_3dalign_basis , MRI_IMAGE , float , float , float , float , float , float )
MRI_IMARR *	mri_3dalign_many (MRI_IMAGE , MRI_IMAGE , MRI_IMARR , float , float , float , float , float , float *)
void	mri_3dalign_cleanup (MRI_3dalign_basis *)
void	mri_3dalign_initvals (float, float, float, float, float, float)
int	mri_warp3D_align_setup (MRI_warp3D_align_basis *)
MRI_IMAGE *	mri_warp3d_align_one (MRI_warp3D_align_basis , MRI_IMAGE )
void	mri_warp3D_align_cleanup (MRI_warp3D_align_basis *)
float	THD_stat_to_pval (float thr, int statcode, float *stataux)
float	THD_pval_to_stat (float pval, int statcode, float *stataux)
float	THD_stat_to_zscore (float thr, int statcode, float *stataux)
int	THD_filename_ok (char *)
int	THD_filename_pure (char *)
int	THD_freemegabytes (char *)
THD_warp *	AFNI_make_voxwarp (THD_warp , THD_3dim_dataset , THD_3dim_dataset *)
THD_linear_mapping *	AFNI_make_voxmap (THD_linear_mapping , THD_dataxes , THD_dataxes *)
void	AFNI_concatenate_warp (THD_warp , THD_warp )
THD_linear_mapping *	AFNI_concatenate_lmap (THD_linear_mapping , THD_linear_mapping )
THD_warp *	AFNI_make_affwarp_12 (float, float, float, float, float, float, float, float, float, float, float, float)
THD_warp *	AFNI_make_affwarp_mat (THD_mat33)
THD_warp *	AFNI_make_affwarp_matvec (THD_mat33, THD_fvec3)
THD_ivec3	THD_matrix_to_orientation (THD_mat33 R)
THD_3dim_dataset *	WINsorize (THD_3dim_dataset , int, int, int, float, char , int, int, byte *)
THD_3dim_dataset *	THD_zeropad (THD_3dim_dataset , int, int, int, int, int, int, char , int)
THD_3dim_dataset *	THD_warp3D (THD_3dim_dataset , void w_in2out(float, float, float, float , float , float ), void w_out2in(float, float, float, float , float , float ), void , char *, int, int)
THD_3dim_dataset *	THD_warp3D_affine (THD_3dim_dataset , THD_vecmat, void , char *, int, int)
THD_3dim_dataset *	THD_warp3D_mni2tta (THD_3dim_dataset , void , char *, int, int)
THD_3dim_dataset *	THD_warp3D_tta2mni (THD_3dim_dataset , void , char *, int, int)
void	ENTROPY_setup (void)
void	ENTROPY_setdown (void)
void	ENTROPY_accumulate (int, void *)
double	ENTROPY_compute (void)
double	ENTROPY_dataset (THD_3dim_dataset *)
double	ENTROPY_datablock (THD_datablock *)
void	tross_Add_Note (THD_3dim_dataset , char )
void	tross_Delete_Note (THD_3dim_dataset *, int)
char *	tross_Expand_String (char *)
char *	tross_Encode_String (char *)
void	tross_Dont_Encode_Slash (int)
void	tross_Store_Note (THD_3dim_dataset , int, char )
char *	tross_Get_Note (THD_3dim_dataset *, int)
char *	tross_Get_Notedate (THD_3dim_dataset *, int)
int	tross_Get_Notecount (THD_3dim_dataset *)
void	tross_Addto_History (THD_3dim_dataset , THD_3dim_dataset )
char *	tross_datetime (void)
char *	tross_username (void)
char *	tross_hostname (void)
char *	tross_commandline (char , int, char *)
int	AFNI_logger (char , int, char *)
void	AFNI_sleep (int)
void	AFNI_serverlog (char *)
void	THD_outlier_count (THD_3dim_dataset , float, int , int )
void	tross_Append_History (THD_3dim_dataset , char )
char *	tross_Get_History (THD_3dim_dataset *)
void	tross_Make_History (char , int, char , THD_3dim_dataset )
void	tross_Copy_History (THD_3dim_dataset , THD_3dim_dataset )
void	tross_Replace_History (THD_3dim_dataset , char )
char *	tross_breakup_string (char *, int, int)
void	tross_multi_Append_History (THD_3dim_dataset *,...)
void	B64_to_binary (int, byte , int , byte **)
void	B64_to_base64 (int, byte , int , byte **)
void	B64_set_linelen (int)
void	B64_set_crlf (int)
char *	MD5_static_array (int, char *)
char *	MD5_malloc_array (int, char *)
char *	MD5_static_string (char *)
char *	MD5_malloc_string (char *)
char *	MD5_static_file (char *)
char *	MD5_malloc_file (char *)
char *	MD5_B64_array (int, char *)
char *	MD5_B64_string (char *)
char *	MD5_B64_file (char *)
char *	UNIQ_idcode (void)
void	UNIQ_idcode_fill (char *)
char *	TT_whereami (float, float, float)
int	TT_load_atlas (void)
void	TT_purge_atlas (void)
THD_3dim_dataset *	TT_retrieve_atlas (void)
THD_3dim_dataset *	TT_retrieve_atlas_big (void)
void	TT_purge_atlas_big (void)
THD_3dim_dataset *	TT_retrieve_atlas_either (void)
float	THD_spearman_corr (int, float , float )
float	THD_quadrant_corr (int, float , float )
float	THD_pearson_corr (int, float , float )
THD_fvec3	THD_autonudge (THD_3dim_dataset dsepi, int ivepi, THD_3dim_dataset dsant, int ivant, float step, int xstep, int ystep, int zstep, int code)
MRI_IMAGE *	mri_brainormalize (MRI_IMAGE , int, int, int, MRI_IMAGE , MRI_IMAGE *)
void	mri_brainormalize_verbose (int)
void	brainnormalize_coord (float ispat, float jspat, float kspat, float iorig, float jorig, float korig, THD_3dim_dataset origset, float xrai_orig, float yrai_orig, float *zrai_orig)
	takes in voxel indices into the Spat Normed volume (RAI) and returns voxel indices and coordinates in the original volume. Used to figure out shift to apply to surface model to align it with original volume.
MRI_IMAGE *	mri_watershedize (MRI_IMAGE *, float)
void	mri_brainormalize_initialize (float dx, float dy, float dz)
float	THD_BN_dxyz (void)
int	THD_BN_nx (void)
int	THD_BN_ny (void)
int	THD_BN_nz (void)
NI_group *	THD_nimlize_dsetatr (THD_3dim_dataset *)
void	THD_dblkatr_from_niml (NI_group , THD_datablock )
void	THD_set_dataset_attributes (THD_3dim_dataset *)
THD_3dim_dataset *	THD_niml_to_dataset (NI_group *, int)
int	THD_add_bricks (THD_3dim_dataset , void )
NI_element *	THD_subbrick_to_niml (THD_3dim_dataset *, int, int)
NI_group *	THD_dataset_to_niml (THD_3dim_dataset *)
MRI_IMAGE *	niml_to_mri (NI_element *)
NI_element *	mri_to_niml (MRI_IMAGE *)
Variables
char *	ATR_typestr []
char *	MAPPING_typestr []
int	THD_align_aflags [MARKS_MAXFLAG]
char *	THD_align_label [NMARK_ALIGN]
char *	THD_align_help [NMARK_ALIGN]
int	THD_bounding_aflags [MARKS_MAXFLAG]
char *	THD_bounding_label [NMARK_BOUNDING]
char *	THD_bounding_help [NMARK_BOUNDING]
char *	WARP_typestr []
char *	RESAM_typestr []
char *	RESAM_shortstr [] = { "NN" , "Li" , "Cu" , "Bk" }
THD_warp	tempA_warp
char *	ORIENT_typestr []
char *	ORIENT_shortstr []
char *	ORIENT_tinystr []
char	ORIENT_xyz [] = "xxyyzzg"
char	ORIENT_sign [] = "+--++-"
char	ORIENT_first [] = "RLPAIS"
int	ORIENT_xyzint [] = { 1,1 , 2,2 , 3,3 , 666 }
char *	UNITS_TYPE_labelstring [] = { "ms" , "s" , "Hz" }
MCW_idcode	MCW_new_idcode (void)
char *	DATASET_typestr []
char *	VIEW_typestr []
char *	VIEW_codestr []
char *	FUNC_typestr []
char *	FUNC_prefixstr []
float	FUNC_topval []
int	FUNC_scale_short []
int	FUNC_scale_byte []
char *	FUNC_label []
char *	FUNC_descriptor []
int	FUNC_nvals [] = { 1, 2,2,2,2,2,2,2,2,2,2, 1 }
int	FUNC_ival_fim [] = { 0, 0,0,0,0,0,0,0,0,0,0, 0 }
int	FUNC_ival_thr [] = { FIMTHR, 1,1,1,1,1,1,1,1,1,1, 0 }
int	FUNC_need_stat_aux []
char *	FUNC_label_stat_aux []
char *	ANAT_typestr []
char *	ANAT_prefixstr []
char *	DSET_prefixstr [NUM_DSET_TYPES]
int	ANAT_nvals [] = { 1,1,1,1,1,1,1,1,1,1,1,1 , 1 }
int	ANAT_ival_zero [] = { 0,0,0,0,0,0,0,0,0,0,0,0 , 0 }
char	tmp_dblab [8]
THD_brick_stats	THD_get_brick_stats (MRI_IMAGE *)
THD_fvec3	THD_dataset_center (THD_3dim_dataset *)
THD_dmat33	DBLE_mat_to_dicomm (THD_3dim_dataset *)
THD_mat33	SNGL_mat_to_dicomm (THD_3dim_dataset *)

Detailed Description

This file contains the definition of the structs, macros, etc. for AFNI datasets.

Definition in file 3ddata.h.

Define Documentation

#define ADDTO_3DARR	(	name,
		ddset		)

Value:

{ if( (name)->num == (name)->nall ){                               \
      (name)->nall += INC_3DARR ;                                     \
      (name)->ar    = (THD_3dim_dataset **)                           \
                       XtRealloc( (char *) (name)->ar ,               \
                        sizeof(THD_3dim_dataset *) * (name)->nall ) ; \
     }                                                             \
     if( (ddset) != NULL ){               \
      (name)->ar[(name)->num] = (ddset) ; \
      ((name)->num)++ ;                  \
     } }

Add dataset ddset to AFNI dataset array "name"

Definition at line 2780 of file 3ddata.h.

Referenced by B2F_read_opts(), BUCK_read_opts(), TCAT_read_opts(), THD_array_3dim_from_block(), and ZCAT_read_opts().

#define ADDTO_DBARR	(	name,
		bblk		)

Value:

{ if( (name)->num == (name)->nall ){                            \
      (name)->nall += INC_DBARR ;                                  \
      (name)->ar    = (THD_datablock **)                           \
                       XtRealloc( (char *) (name)->ar ,            \
                        sizeof(THD_datablock *) * (name)->nall ) ; \
     }                                                             \
     if( (bblk) != NULL ){               \
      (name)->ar[(name)->num] = (bblk) ; \
      ((name)->num)++ ;                  \
     } }

Add a datablock to a THD_datablock_array.

Definition at line 1172 of file 3ddata.h.

Referenced by THD_init_prefix_datablocks().

#define ADDTO_SARR	(	name,
		str		)

Value:

do{ if( (name)->num == (name)->nall ){                               \
      (name)->nall += INC_SARR ;                                      \
      (name)->ar    = (char **) XtRealloc( (char *) (name)->ar ,      \
                                 sizeof(char *) * (name)->nall ) ;    \
     }                                                                \
     if( (str) != NULL ){                                             \
      (name)->ar[(name)->num] = (char *) XtMalloc( strlen((str))+1 ) ;\
      strcpy( (name)->ar[(name)->num] , (str) ) ;                     \
      ADDTO_KILL((name)->kl,(name)->ar[(name)->num]) ;                \
      ((name)->num)++ ;                                               \
     } } while(0)

Add string str to dynamic string array "name".

Definition at line 307 of file 3ddata.h.

Referenced by AFNI_read_inputs(), AFNI_rescan_timeseries_CB(), AFNI_write_many_dataset_CB(), ISQ_saver_CB(), MCW_stradd_CB(), NLFIT_get_many_MODELs(), PLUG_get_many_plugins(), T3D_read_images(), THD_extract_directories(), THD_extract_regular_files(), THD_get_all_executables(), THD_get_all_filenames(), THD_get_all_subdirs(), THD_get_many_timeseries(), THD_get_wildcard_filenames(), THD_getpathprogs(), THD_normalize_flist(), TT_read_opts(), and TT_whereami().

#define ADDTO_XTARR	(	name,
		bblk		)

Value:

{ if( (name)->num == (name)->nall ){                        \
      (name)->nall += INC_XTARR ;                              \
      (name)->ar    = (XtPointer *)                            \
                       XtRealloc( (char *) (name)->ar ,        \
                          sizeof(XtPointer) * (name)->nall ) ; \
      (name)->ic    = (int *) XtRealloc( (char *) (name)->ic , \
                          sizeof(int) * (name)->nall ) ;       \
     }                                                         \
     if( (XtPointer) (bblk) != NULL ){               \
      (name)->ar[(name)->num] = (XtPointer) (bblk) ; \
      (name)->ic[(name)->num] = 0                  ; \
      ((name)->num)++ ;                              \
     } }

Add a pointer to a dynamic XtPointer array.

Definition at line 233 of file 3ddata.h.

Referenced by AFNI_add_interruptable(), AFNI_finalize_read_Web_CB(), AFNI_read_inputs(), B2F_read_opts(), BUCK_read_opts(), TCAT_read_opts(), THD_fetch_many_datasets(), and THD_init_alldir_datablocks().

#define AFNI_FIRST_STATCODE FUNC_COR_TYPE

Definition at line 1772 of file 3ddata.h.

Referenced by THD_datablock_from_atr(), and THD_open_3D().

#define AFNI_LAST_STATCODE FUNC_PT_TYPE

Definition at line 1773 of file 3ddata.h.

Referenced by THD_datablock_from_atr(), and THD_open_3D().

#define AFNI_log_string

(

)

AFNI_logger(ss,0,NULL)

Definition at line 3823 of file 3ddata.h.

Referenced by T3D_initialize_user_data().

#define ALLOW_FSL_FEAT

Definition at line 3338 of file 3ddata.h.

#define ALLOW_MINC

Enables compilation of the MINC dataset code.

Definition at line 56 of file 3ddata.h.

#define ANAT_ALL_MASK

Value:

( ANAT_SPGR_MASK | ANAT_FSE_MASK | ANAT_EPI_MASK   | \
                        ANAT_MRAN_MASK | ANAT_CT_MASK  | ANAT_SPECT_MASK | \
                        ANAT_PET_MASK  | ANAT_MRA_MASK | ANAT_BMAP_MASK  | \
                        ANAT_DIFF_MASK | ANAT_OMRI_MASK| ANAT_BUCK_MASK  | \
                        ANAT_MAPC_MASK )

Definition at line 1903 of file 3ddata.h.

Referenced by CORREL_init(), and PLUGIN_init().

#define ANAT_BMAP_MASK (1 << ANAT_BMAP_TYPE)

Definition at line 1878 of file 3ddata.h.

#define ANAT_BMAP_PREFIX "bmap"

Definition at line 1877 of file 3ddata.h.

#define ANAT_BMAP_STR "B-field Map"

Definition at line 1876 of file 3ddata.h.

#define ANAT_BMAP_TYPE 8

Definition at line 1875 of file 3ddata.h.

#define ANAT_BUCK_MASK (1 << ANAT_BUCK_TYPE)

Definition at line 1893 of file 3ddata.h.

#define ANAT_BUCK_PREFIX "abuc"

Definition at line 1892 of file 3ddata.h.

#define ANAT_BUCK_STR "Anat Bucket"

Definition at line 1891 of file 3ddata.h.

#define ANAT_BUCK_TYPE 11

Definition at line 1890 of file 3ddata.h.

Referenced by EDIT_wod_copy(), main(), SUMA_BrainVoyager_Read_vmr(), SUMA_OpenDX_Read_CruiseVolHead(), THD_open_1D(), THD_open_3D(), THD_open_minc(), THD_open_nifti(), and THD_setup_mastery().

#define ANAT_CT_MASK (1 << ANAT_CT_TYPE)

Definition at line 1858 of file 3ddata.h.

#define ANAT_CT_PREFIX "ct"

Definition at line 1857 of file 3ddata.h.

#define ANAT_CT_STR "CT Scan"

Definition at line 1856 of file 3ddata.h.

#define ANAT_CT_TYPE 4

Definition at line 1855 of file 3ddata.h.

#define ANAT_DIFF_MASK (1 << ANAT_DIFF_TYPE)

Definition at line 1883 of file 3ddata.h.

#define ANAT_DIFF_PREFIX "diff"

Definition at line 1882 of file 3ddata.h.

#define ANAT_DIFF_STR "Diffusion Map"

Definition at line 1881 of file 3ddata.h.

#define ANAT_DIFF_TYPE 9

Definition at line 1880 of file 3ddata.h.

#define ANAT_EPI_MASK (1 << ANAT_EPI_TYPE)

Definition at line 1848 of file 3ddata.h.

Referenced by PLUGIN_init().

#define ANAT_EPI_PREFIX "epan"

Definition at line 1847 of file 3ddata.h.

#define ANAT_EPI_STR "Echo Planar"

Definition at line 1846 of file 3ddata.h.

#define ANAT_EPI_TYPE 2

Definition at line 1845 of file 3ddata.h.

Referenced by AFNI_read_inputs(), main(), RT_start_dataset(), T3D_initialize_user_data(), THD_open_1D(), THD_open_3D(), THD_open_analyze(), THD_open_minc(), THD_open_mpeg(), THD_open_nifti(), and THD_open_tcat().

#define ANAT_FSE_MASK (1 << ANAT_FSE_TYPE)

Definition at line 1843 of file 3ddata.h.

#define ANAT_FSE_PREFIX "fse"

Definition at line 1842 of file 3ddata.h.

#define ANAT_FSE_STR "Fast Spin Echo"

Definition at line 1841 of file 3ddata.h.

#define ANAT_FSE_TYPE 1

Definition at line 1840 of file 3ddata.h.

#define ANAT_MAPC_MASK (1 << ANAT_MAPC_TYPE)

Definition at line 1898 of file 3ddata.h.

#define ANAT_MAPC_PREFIX "mapc"

Definition at line 1897 of file 3ddata.h.

#define ANAT_MAPC_STR "Mapped Color"

Definition at line 1896 of file 3ddata.h.

#define ANAT_MAPC_TYPE 12

Definition at line 1895 of file 3ddata.h.

#define ANAT_MRA_MASK (1 << ANAT_MRA_TYPE)

Definition at line 1873 of file 3ddata.h.

#define ANAT_MRA_PREFIX "mra"

Definition at line 1872 of file 3ddata.h.

#define ANAT_MRA_STR "MR Angiography"

Definition at line 1871 of file 3ddata.h.

#define ANAT_MRA_TYPE 7

Definition at line 1870 of file 3ddata.h.

#define ANAT_MRAN_MASK (1 << ANAT_MRAN_TYPE)

Definition at line 1853 of file 3ddata.h.

#define ANAT_MRAN_PREFIX "anat"

Definition at line 1852 of file 3ddata.h.

#define ANAT_MRAN_STR "MRI Anatomy"

Definition at line 1851 of file 3ddata.h.

#define ANAT_MRAN_TYPE 3

Definition at line 1850 of file 3ddata.h.

Referenced by THD_open_analyze(), THD_open_ctfmri(), THD_open_minc(), and THD_open_mpeg().

#define ANAT_OMRI_MASK (1 << ANAT_OMRI_TYPE)

Definition at line 1888 of file 3ddata.h.

#define ANAT_OMRI_PREFIX "omri"

Definition at line 1887 of file 3ddata.h.

#define ANAT_OMRI_STR "Other MRI"

Definition at line 1886 of file 3ddata.h.

#define ANAT_OMRI_TYPE 10

Definition at line 1885 of file 3ddata.h.

Referenced by DRAW_copy_dset().

#define ANAT_PET_MASK (1 << ANAT_PET_TYPE)

Definition at line 1868 of file 3ddata.h.

#define ANAT_PET_PREFIX "pet"

Definition at line 1867 of file 3ddata.h.

#define ANAT_PET_STR "PET Anatomy"

Definition at line 1866 of file 3ddata.h.

#define ANAT_PET_TYPE 6

Definition at line 1865 of file 3ddata.h.

#define ANAT_SPECT_MASK (1 << ANAT_SPECT_TYPE)

Definition at line 1863 of file 3ddata.h.

#define ANAT_SPECT_PREFIX "spct"

Definition at line 1862 of file 3ddata.h.

#define ANAT_SPECT_STR "SPECT Anatomy"

Definition at line 1861 of file 3ddata.h.

#define ANAT_SPECT_TYPE 5

Definition at line 1860 of file 3ddata.h.

#define ANAT_SPGR_MASK (1 << ANAT_SPGR_TYPE)

Definition at line 1838 of file 3ddata.h.

Referenced by PLUGIN_init().

#define ANAT_SPGR_PREFIX "spgr"

Definition at line 1837 of file 3ddata.h.

#define ANAT_SPGR_STR "Spoiled GRASS"

Definition at line 1836 of file 3ddata.h.

#define ANAT_SPGR_TYPE 0

Definition at line 1835 of file 3ddata.h.

Referenced by EDIT_empty_copy(), and main().

#define ATLAS_AC_TO_LAT 68.0

Definition at line 679 of file 3ddata.h.

Referenced by AFNI_make_warp(), and AFNI_marks_quality_check().

#define ATLAS_AC_TO_PC 23.0

Definition at line 674 of file 3ddata.h.

Referenced by AFNI_make_warp(), and AFNI_marks_quality_check().

#define ATLAS_AC_TO_TOP 74.0

Definition at line 678 of file 3ddata.h.

Referenced by AFNI_make_warp(), and AFNI_marks_quality_check().

#define ATLAS_ALIGNBOX_ANT 95.0

Definition at line 690 of file 3ddata.h.

Referenced by AFNI_make_warp().

#define ATLAS_ALIGNBOX_INF 70.0

Definition at line 693 of file 3ddata.h.

Referenced by AFNI_make_warp().

#define ATLAS_ALIGNBOX_LAT 95.0

Definition at line 689 of file 3ddata.h.

Referenced by AFNI_make_warp().

#define ATLAS_ALIGNBOX_POS 140.0

Definition at line 691 of file 3ddata.h.

Referenced by AFNI_make_warp().

#define ATLAS_ALIGNBOX_SUP 100.0

Definition at line 692 of file 3ddata.h.

Referenced by AFNI_make_warp().

#define ATLAS_BBOX_ANT 80.0

Definition at line 682 of file 3ddata.h.

Referenced by AFNI_init_warp().

#define ATLAS_BBOX_INF 55.0

Definition at line 684 of file 3ddata.h.

Referenced by AFNI_init_warp().

#define ATLAS_BBOX_INF_NEW 65.0

Definition at line 687 of file 3ddata.h.

Referenced by AFNI_init_warp().

#define ATLAS_BBOX_LAT 80.0

Definition at line 681 of file 3ddata.h.

Referenced by AFNI_init_warp().

#define ATLAS_BBOX_POS 110.0

Definition at line 683 of file 3ddata.h.

Referenced by AFNI_init_warp().

#define ATLAS_BBOX_SUP 85.0

Definition at line 685 of file 3ddata.h.

Referenced by AFNI_init_warp().

#define ATLAS_BOT_TO_AC 42.0

Definition at line 677 of file 3ddata.h.

Referenced by AFNI_make_warp(), and AFNI_marks_quality_check().

#define ATLAS_FRONT_TO_AC 70.0

Atlas distances for acpc->tlrc markers. If you change these, change the helps below too

Definition at line 673 of file 3ddata.h.

Referenced by AFNI_make_warp(), and AFNI_marks_quality_check().

#define ATLAS_PC_TO_BACK 79.0

Definition at line 675 of file 3ddata.h.

Referenced by AFNI_make_warp(), and AFNI_marks_quality_check().

#define ATR_FLOAT_TYPE 1

Definition at line 427 of file 3ddata.h.

Referenced by atr_print(), main(), THD_anonymize_dset(), THD_copy_atr(), THD_erase_all_atr(), THD_erase_one_atr(), THD_find_atr(), THD_find_float_atr(), THD_insert_atr(), THD_nimlize_dsetatr(), THD_read_all_atr(), THD_set_atr(), THD_set_float_atr(), and THD_write_atr().

#define ATR_INT_TYPE 2

Definition at line 428 of file 3ddata.h.

Referenced by atr_print(), THD_anonymize_dset(), THD_copy_atr(), THD_erase_all_atr(), THD_erase_one_atr(), THD_find_atr(), THD_find_int_atr(), THD_insert_atr(), THD_nimlize_dsetatr(), THD_read_all_atr(), THD_set_atr(), THD_set_int_atr(), and THD_write_atr().

#define ATR_STRING_TYPE 0

Definition at line 426 of file 3ddata.h.

Referenced by atr_print(), main(), THD_anonymize_dset(), THD_copy_atr(), THD_erase_all_atr(), THD_erase_one_atr(), THD_find_atr(), THD_find_string_atr(), THD_insert_atr(), THD_nimlize_dsetatr(), THD_read_all_atr(), THD_set_atr(), THD_set_char_atr(), and THD_write_atr().

#define ATRNAME_ANATOMY_PARENT "ANATOMY_PARENTNAME"

Definition at line 2939 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRNAME_BRICK_FLTFAC "BRICK_FLOAT_FACS"

Definition at line 3028 of file 3ddata.h.

Referenced by THD_datablock_from_atr(), and THD_set_dataset_attributes().

#define ATRNAME_BRICK_KEYWORDS "BRICK_KEYWORDS"

Definition at line 3053 of file 3ddata.h.

Referenced by THD_anonymize_dset(), THD_datablock_apply_atr(), THD_datablock_from_atr(), and THD_set_dataset_attributes().

#define ATRNAME_BRICK_LABS "BRICK_LABS"

30 Nov 1997 *

Definition at line 3051 of file 3ddata.h.

Referenced by THD_datablock_apply_atr(), THD_datablock_from_atr(), and THD_set_dataset_attributes().

#define ATRNAME_BRICK_STATAUX "BRICK_STATAUX"

Definition at line 3052 of file 3ddata.h.

Referenced by THD_datablock_apply_atr(), THD_datablock_from_atr(), and THD_set_dataset_attributes().

#define ATRNAME_BRICK_STATS "BRICK_STATS"

Definition at line 3024 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRNAME_BRICK_TYPES "BRICK_TYPES"

additions 1995 Nov 15, for variable brick data types *

Definition at line 3020 of file 3ddata.h.

Referenced by THD_datablock_from_atr(), and THD_set_dataset_attributes().

#define ATRNAME_BYTEORDER "BYTEORDER_STRING"

Definition at line 951 of file 3ddata.h.

Referenced by THD_datablock_from_atr(), THD_dataset_info(), and THD_write_datablock().

#define ATRNAME_DATANAME "DATASET_NAME"

Definition at line 2935 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_anonymize_dset(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRNAME_DATASET_DIMENSIONS "DATASET_DIMENSIONS"

Definition at line 3001 of file 3ddata.h.

Referenced by THD_datablock_from_atr(), and THD_set_dataset_attributes().

#define ATRNAME_DATASET_RANK "DATASET_RANK"

Definition at line 2997 of file 3ddata.h.

Referenced by THD_datablock_from_atr(), and THD_set_dataset_attributes().

#define ATRNAME_DELTA "DELTA"

Definition at line 2953 of file 3ddata.h.

Referenced by THD_3dim_from_block(), and THD_set_dataset_attributes().

#define ATRNAME_IDANATPAR "IDCODE_ANAT_PARENT"

Definition at line 1498 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRNAME_IDDATE "IDCODE_DATE"

Definition at line 1497 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRNAME_IDSTRING "IDCODE_STRING"

Definition at line 1496 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_apply_atr(), THD_dblkatr_from_niml(), and THD_set_dataset_attributes().

#define ATRNAME_IDWARPPAR "IDCODE_WARP_PARENT"

Definition at line 1499 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRNAME_KEYWORDS "DATASET_KEYWORDS"

Definition at line 3055 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_anonymize_dset(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRNAME_LABEL1 "LABEL_1"

Definition at line 2936 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_anonymize_dset(), and THD_set_dataset_attributes().

#define ATRNAME_LABEL2 "LABEL_2"

Definition at line 2937 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_anonymize_dset(), and THD_set_dataset_attributes().

#define ATRNAME_MARKSFLAG "MARKS_FLAGS"

Definition at line 2973 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRNAME_MARKSHELP "MARKS_HELP"

Definition at line 2969 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRNAME_MARKSLAB "MARKS_LAB"

Definition at line 2965 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRNAME_MARKSXYZ "MARKS_XYZ"

Definition at line 2961 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRNAME_MINMAX "MINMAX"

Definition at line 3005 of file 3ddata.h.

Referenced by THD_3dim_from_block().

#define ATRNAME_ORIENT_GENERAL "ORIENT_GENERAL" /*** not used yet ***/

Definition at line 2945 of file 3ddata.h.

#define ATRNAME_ORIENT_SPECIFIC "ORIENT_SPECIFIC"

Definition at line 2941 of file 3ddata.h.

Referenced by THD_3dim_from_block(), and THD_set_dataset_attributes().

#define ATRNAME_ORIGIN "ORIGIN"

Definition at line 2949 of file 3ddata.h.

Referenced by THD_3dim_from_block(), and THD_set_dataset_attributes().

#define ATRNAME_SCENE_TYPE "SCENE_DATA"

Definition at line 2993 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_from_atr(), and THD_set_dataset_attributes().

#define ATRNAME_SKIP "SKIP"

Definition at line 2957 of file 3ddata.h.

#define ATRNAME_STAT_AUX "STAT_AUX"

1996 Mar 26 *

Definition at line 3034 of file 3ddata.h.

Referenced by THD_3dim_from_block(), and THD_set_dataset_attributes().

#define ATRNAME_TAXIS_FLOATS "TAXIS_FLOATS"

Definition at line 3043 of file 3ddata.h.

Referenced by THD_3dim_from_block(), and THD_set_dataset_attributes().

#define ATRNAME_TAXIS_NUMS "TAXIS_NUMS"

1996 May 14 *

Definition at line 3040 of file 3ddata.h.

Referenced by THD_3dim_from_block(), and THD_set_dataset_attributes().

#define ATRNAME_TAXIS_OFFSETS "TAXIS_OFFSETS"

Definition at line 3046 of file 3ddata.h.

Referenced by THD_3dim_from_block(), and THD_set_dataset_attributes().

#define ATRNAME_TYPESTRING "TYPESTRING"

Definition at line 2977 of file 3ddata.h.

Referenced by THD_3dim_from_block(), and THD_set_dataset_attributes().

#define ATRNAME_WARP_DATA "WARP_DATA"

Definition at line 2985 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRNAME_WARP_PARENT "WARP_PARENTNAME"

Definition at line 2989 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRNAME_WARP_TYPE "WARP_TYPE"

Definition at line 2981 of file 3ddata.h.

Referenced by THD_3dim_from_block(), THD_datablock_apply_atr(), and THD_set_dataset_attributes().

#define ATRSIZE_BRICK_FLTFAC 0

Definition at line 3030 of file 3ddata.h.

#define ATRSIZE_BRICK_STATS 0

Definition at line 3026 of file 3ddata.h.

#define ATRSIZE_BRICK_TYPES 0

Definition at line 3022 of file 3ddata.h.

#define ATRSIZE_DATASET_DIMENSIONS THD_MAX_RANK_EVER

Definition at line 3003 of file 3ddata.h.

Referenced by THD_set_dataset_attributes(), and THD_write_datablock().

#define ATRSIZE_DATASET_RANK 8

Definition at line 2999 of file 3ddata.h.

Referenced by THD_set_dataset_attributes(), and THD_write_datablock().

#define ATRSIZE_DELTA 3

Definition at line 2955 of file 3ddata.h.

Referenced by THD_set_dataset_attributes().

#define ATRSIZE_MARKSFLAG MARKS_MAXFLAG

Definition at line 2975 of file 3ddata.h.

Referenced by THD_set_dataset_attributes().

#define ATRSIZE_MARKSHELP MARKS_HSIZE

Definition at line 2971 of file 3ddata.h.

Referenced by THD_set_dataset_attributes().

#define ATRSIZE_MARKSLAB MARKS_LSIZE

Definition at line 2967 of file 3ddata.h.

Referenced by THD_set_dataset_attributes().

#define ATRSIZE_MARKSXYZ MARKS_FSIZE

Definition at line 2963 of file 3ddata.h.

Referenced by THD_set_dataset_attributes().

#define ATRSIZE_ORIENT_GENERAL 9

Definition at line 2947 of file 3ddata.h.

#define ATRSIZE_ORIENT_SPECIFIC 3

Definition at line 2943 of file 3ddata.h.

Referenced by THD_set_dataset_attributes().

#define ATRSIZE_ORIGIN 3

Definition at line 2951 of file 3ddata.h.

Referenced by THD_set_dataset_attributes().

#define ATRSIZE_SCENE_TYPE 8

Definition at line 2995 of file 3ddata.h.

Referenced by THD_set_dataset_attributes().

#define ATRSIZE_SKIP 3

Definition at line 2959 of file 3ddata.h.

#define ATRSIZE_STAT_AUX 0

Definition at line 3036 of file 3ddata.h.

#define ATRSIZE_TAXIS_FLOATS 8

Definition at line 3044 of file 3ddata.h.

Referenced by THD_set_dataset_attributes().

#define ATRSIZE_TAXIS_NUMS 8

Definition at line 3041 of file 3ddata.h.

Referenced by THD_set_dataset_attributes().

#define ATRSIZE_TAXIS_OFFSETS 0

Definition at line 3047 of file 3ddata.h.

#define ATRSIZE_TYPESTRING 0

Definition at line 2979 of file 3ddata.h.

#define ATRSIZE_WARP_DATA 0

Definition at line 2987 of file 3ddata.h.

#define ATRSIZE_WARP_PARENT 0

Definition at line 2991 of file 3ddata.h.

#define ATRSIZE_WARP_TYPE 8

Definition at line 2983 of file 3ddata.h.

Referenced by THD_set_dataset_attributes().

#define ATRTYPE_BRICK_FLTFAC ATR_FLOAT_TYPE

Definition at line 3029 of file 3ddata.h.

#define ATRTYPE_BRICK_STATS ATR_FLOAT_TYPE

Definition at line 3025 of file 3ddata.h.

#define ATRTYPE_BRICK_TYPES ATR_INT_TYPE

Definition at line 3021 of file 3ddata.h.

#define ATRTYPE_DATASET_DIMENSIONS ATR_INT_TYPE

Definition at line 3002 of file 3ddata.h.

#define ATRTYPE_DATASET_RANK ATR_INT_TYPE

Definition at line 2998 of file 3ddata.h.

#define ATRTYPE_DELTA ATR_FLOAT_TYPE

Definition at line 2954 of file 3ddata.h.

#define ATRTYPE_MARKSFLAG ATR_INT_TYPE

Definition at line 2974 of file 3ddata.h.

#define ATRTYPE_MARKSHELP ATR_STRING_TYPE

Definition at line 2970 of file 3ddata.h.

#define ATRTYPE_MARKSLAB ATR_STRING_TYPE

Definition at line 2966 of file 3ddata.h.

#define ATRTYPE_MARKSXYZ ATR_FLOAT_TYPE

Definition at line 2962 of file 3ddata.h.

#define ATRTYPE_MINMAX ATR_INT_TYPE

Definition at line 3006 of file 3ddata.h.

#define ATRTYPE_ORIENT_GENERAL ATR_FLOAT_TYPE

Definition at line 2946 of file 3ddata.h.

#define ATRTYPE_ORIENT_SPECIFIC ATR_INT_TYPE

Definition at line 2942 of file 3ddata.h.

#define ATRTYPE_ORIGIN ATR_FLOAT_TYPE

Definition at line 2950 of file 3ddata.h.

#define ATRTYPE_SCENE_TYPE ATR_INT_TYPE

Definition at line 2994 of file 3ddata.h.

#define ATRTYPE_SKIP ATR_FLOAT_TYPE

Definition at line 2958 of file 3ddata.h.

#define ATRTYPE_STAT_AUX ATR_FLOAT_TYPE

Definition at line 3035 of file 3ddata.h.

#define ATRTYPE_TYPESTRING ATR_STRING_TYPE

Definition at line 2978 of file 3ddata.h.

#define ATRTYPE_WARP_DATA ATR_FLOAT_TYPE

Definition at line 2986 of file 3ddata.h.

#define ATRTYPE_WARP_PARENT ATR_STRING_TYPE

Definition at line 2990 of file 3ddata.h.

#define ATRTYPE_WARP_TYPE ATR_INT_TYPE

Definition at line 2982 of file 3ddata.h.

#define BADFIND

(

)

Value:

( (ff).sess_index=(ff).dset_index=(ff).view_index=-1 , \
     (ff).dset = NULL )

Set the find codes to indicate a bad result

Definition at line 2924 of file 3ddata.h.

Referenced by PLUTO_dset_finder(), THD_dset_in_session(), and THD_dset_in_sessionlist().

#define BLANK_SESSION

(

)

Value:

if( ISVALID_SESSION((ss)) ){                                                \
      int id , vv ;                                                           \
      for( id=0 ; id < THD_MAX_SESSION_SIZE ; id++ )                          \
        for( vv=0 ; vv <= LAST_VIEW_TYPE ; vv++ ) (ss)->dsset[id][vv] = NULL; \
      (ss)->num_dsset = 0 ;                                                   \
      (ss)->su_num    = 0 ; (ss)->su_surf = NULL ;                            \
      (ss)->su_numgroup = 0 ; (ss)->su_surfgroup = NULL ;                     \
      (ss)->warptable = NULL ; }

Initialize THD_session ss to hold nothing at all.

Definition at line 2866 of file 3ddata.h.

Referenced by AFNI_read_inputs(), and THD_init_session().

#define BLANK_SESSIONLIST

(

)

Value:

if( ISVALID_SESSIONLIST((sl)) ){ \
      int is ; \
      for( is=0 ; is < THD_MAX_NUM_SESSION ; is++ ) (sl)->ssar[is] = NULL ; \
      (sl)->num_sess = 0 ; }

Initialize a THD_sessionlist to contain nothing.

Definition at line 2901 of file 3ddata.h.

Referenced by AFNI_read_inputs().

#define BRICK_DRAWABLE

(

)

((br)->n1 > 1 && (br)->n2 > 1)

Determine if this FD_brick can be drawn (in an image or graph)

Definition at line 3436 of file 3ddata.h.

Referenced by AFNI_underlay_CB().

#define BRICK_GRAPHABLE

(

)

((br)->n1 >= 1 && (br)->n2 >= 1)

Definition at line 3437 of file 3ddata.h.

Referenced by AFNI_underlay_CB().

#define CALC_HELP_STRING

Value:

"CALCULATED DATASETS\n"                                                 \
   "-------------------\n"                                                 \
   " Datasets may also be specified as runtime-generated results from\n"   \
   " program 3dcalc.  This type of dataset specifier is enclosed in\n"     \
   " quotes, and starts with the string '3dcalc(':\n"                      \
   "    '3dcalc( opt opt ... opt )'\n"                                     \
   " where each 'opt' is an option to program 3dcalc; this program\n"      \
   " is run to generate a dataset in the directory given by environment\n" \
   " variable TMPDIR (default=/tmp).  This dataset is then read into\n"    \
   " memory, locked in place, and deleted from disk.  For example\n"       \
   "    afni -dset '3dcalc( -a r1+orig -b r2+orig -expr 0.5*(a+b) )'\n"    \
   " will let you look at the average of datasets r1+orig and r2+orig.\n"  \
   " N.B.: using this dataset input method will use lots of memory!\n"

Help string to explain calculated datasets.

Definition at line 3235 of file 3ddata.h.

Referenced by AFNI_syntax().

#define CEN_WARP	(	ww,
		xin,
		yin,
		zin,
		xout,
		yout,
		zout	)

Value:

do{ THD_fvec3 tv , uv ;                                        \
      LOAD_FVEC3(tv,xin,yin,zin) ;                               \
      uv = MATVEC((ww).rig_bod.warp.mfor,tv) ;                   \
      LOAD_FVEC3(tv,xout,yout,zout) ;                            \
      (ww).rig_bod.warp.bvec = SUB_FVEC3(uv,tv) ;                \
      (ww).rig_bod.warp.svec =                                   \
         MATVEC((ww).rig_bod.warp.mbac,(ww).rig_bod.warp.bvec) ; \
      NEGATE_FVEC3((ww).rig_bod.warp.svec) ;                     \
  } while(0)

Make the affine warp map point (xin,yin,zin) to (xout,yout,zout).

Definition at line 876 of file 3ddata.h.

#define COPY_FROM_STRUCT	(	str,
		off,
		type,
		ptr,
		n	)	(void) memcpy( (char )(ptr), (char )(&(str))+(off), (n)*sizeof(type) )

Copy n units of the given type "type * ptr", from a structure "str", starting at byte offset "off"; N.B.: str is the structure itself, not a pointer to it off is most easily computed with XtOffsetOf

Definition at line 188 of file 3ddata.h.

Referenced by THD_set_dataset_attributes().

#define COPY_INTO_STRUCT	(	str,
		off,
		type,
		ptr,
		n	)	(void) memcpy( (char )(&(str))+(off), (char )(ptr), (n)*sizeof(type) )

Copy n units of the given type "type * ptr", into a structure "str", starting at byte offset "off"; N.B.: str is the structure itself, not a pointer to it off is most easily computed with XtOffsetOf

Definition at line 180 of file 3ddata.h.

Referenced by THD_3dim_from_block(), and THD_datablock_apply_atr().

#define COPY_LMAP_BOUNDS	(	m1,
		m2		)	( (m1).bot=(m2).bot , (m1).top=(m2).top )

Copy the .bot and .top bounds between two THD_linear_mapping structs.

Definition at line 508 of file 3ddata.h.

Referenced by adwarp_follower_dataset(), and AFNI_follower_dataset().

#define CURRENT_DAXES

(

)

(((ds)->wod_flag) ? ((ds)->wod_daxes) : ((ds)->daxes))

Return pointer to current dataset axes (warp-on-demand or permanent).

Definition at line 2048 of file 3ddata.h.

Referenced by AFNI_brick_to_mri(), AFNI_dataset_slice(), AFNI_do_many_writes(), AFNI_jumpto_dicom(), AFNI_jumpto_ijk(), AFNI_lock_carryout(), AFNI_make_voxwarp(), AFNI_seq_send_CB(), AFNI_set_viewpoint(), AFNI_slice_flip(), AFNI_talto_CB(), AFNI_write_dataset_CB(), brainnormalize_coord(), THD_3dfind_to_3dmm(), THD_3dim_dataset_to_brick(), THD_3dind_to_3dmm(), THD_3dmm_to_3dfind(), THD_3dmm_to_3dind(), THD_oriented_brick(), and THD_setup_bricks().

#define DATABLOCK_MEM_ANY (DATABLOCK_MEM_MALLOC | DATABLOCK_MEM_MMAP)

Definition at line 1005 of file 3ddata.h.

Referenced by PLUTO_add_dset(), RT_tell_afni_one(), and THD_force_malloc_type().

#define DATABLOCK_MEM_MALLOC 2

Definition at line 1003 of file 3ddata.h.

Referenced by adwarp_refashion_dataset(), AFNI_fimmer_compute(), AFNI_misc_CB(), AFNI_read_images(), AFNI_read_inputs(), AFNI_refashion_dataset(), B2F_read_opts(), basis_write_iresp(), basis_write_sresp(), BUCK_read_opts(), do_xrestore_stuff(), EDIT_add_bricklist(), EDIT_empty_copy(), EDIT_one_dataset(), EDIT_substitute_brick(), fim3d_fimmer_compute(), form_clusters(), main(), MAKER_4D_to_typed_fbuc(), MAKER_4D_to_typed_fim(), MAKER_4D_to_typed_fith(), output_ts_array(), PERMTEST_main(), POWER_main(), r_fill_resampled_data_brick(), REORDER_main(), RT_fim_recurse(), RT_start_dataset(), STAVG_main(), SUMA_BrainVoyager_Read_vmr(), SUMA_OpenDX_Read_CruiseVolHead(), T3D_read_images(), TCAT_read_opts(), THD_alloc_datablock(), THD_copy_dset_subs(), THD_datablock_from_atr(), THD_delete_datablock(), THD_force_malloc_type(), THD_load_1D(), THD_load_3D(), THD_load_analyze(), THD_load_ctfmri(), THD_load_ctfsam(), THD_load_datablock(), THD_load_minc(), THD_load_mpeg(), THD_load_nifti(), THD_open_1D(), THD_open_3D(), THD_open_analyze(), THD_open_ctfmri(), THD_open_ctfsam(), THD_open_minc(), THD_open_mpeg(), THD_open_nifti(), THD_purge_datablock(), THD_purge_one_brick(), THD_setup_mastery(), THD_warp3D(), THD_write_datablock(), THRESH_main(), write_3dtime(), write_afni_data(), write_afni_fict(), write_afni_fizt(), write_bucket(), write_bucket_data(), write_ts_array(), and ZCAT_read_opts().

#define DATABLOCK_MEM_MMAP 4

Definition at line 1004 of file 3ddata.h.

Referenced by adwarp_refashion_dataset(), AFNI_misc_CB(), AFNI_refashion_dataset(), THD_datablock_from_atr(), THD_delete_datablock(), THD_force_malloc_type(), THD_load_datablock(), THD_purge_datablock(), and THD_write_datablock().

#define DATABLOCK_MEM_SHARED 8

Definition at line 1006 of file 3ddata.h.

Referenced by AFNI_misc_CB(), THD_alloc_datablock(), THD_delete_datablock(), THD_load_datablock(), and THD_purge_datablock().

#define DATABLOCK_MEM_UNDEFINED 1

Definition at line 1002 of file 3ddata.h.

Referenced by adwarp_follower_dataset(), adwarp_refashion_dataset(), AFNI_follower_dataset(), AFNI_init_warp(), AFNI_refashion_dataset(), duplicate_dataset(), EDIT_empty_datablock(), EDIT_wod_copy(), THD_init_one_datablock(), THD_load_datablock(), and THD_write_datablock().

#define DATABLOCK_TYPE 37

Definition at line 1000 of file 3ddata.h.

Referenced by adwarp_follower_dataset(), AFNI_follower_dataset(), AFNI_init_warp(), AFNI_read_images(), duplicate_dataset(), EDIT_empty_copy(), EDIT_empty_datablock(), T3D_read_images(), and THD_init_one_datablock().

#define DATASET_BRICK_SUFFIX "BRIK"

Definition at line 899 of file 3ddata.h.

Referenced by main(), T3D_create_widgets(), THD_init_diskptr_names(), THD_open_one_dataset(), THD_rename_dataset_files(), and THD_write_datablock().

#define DATASET_HEADER_SUFFIX "HEAD"

Definition at line 898 of file 3ddata.h.

Referenced by T3D_check_data(), T3D_create_widgets(), THD_init_alldir_datablocks(), THD_init_diskptr_names(), THD_init_one_datablock(), THD_init_prefix_datablocks(), THD_open_one_dataset(), and THD_rename_dataset_files().

#define DATASET_NOTES_SUFFIX "NOTE"

Definition at line 900 of file 3ddata.h.

#define DATAXES_TO_DISKPTR

(

)

Value:

( (ds)->dblk->diskptr->dimsizes[0] = (ds)->daxes->nxx ,  \
    (ds)->dblk->diskptr->dimsizes[1] = (ds)->daxes->nyy ,  \
    (ds)->dblk->diskptr->dimsizes[2] = (ds)->daxes->nzz  )

WARNING: If you perform surgery on a dataset and change its dimensions in the dataxes, you must also reflect this in the diskptr. Otherwise, the .HEAD file will not have the correct dimensions! The macro just below will do this for you.

Definition at line 1319 of file 3ddata.h.

#define DATAXES_TYPE 27

Definition at line 1194 of file 3ddata.h.

Referenced by adwarp_refashion_dataset(), AFNI_do_many_writes(), AFNI_init_warp(), AFNI_make_wid2(), AFNI_read_images(), AFNI_refashion_dataset(), AFNI_write_dataset_CB(), EDIT_empty_copy(), main(), r_new_resam_dset(), T3D_read_images(), and THD_3dim_from_block().

#define DAXES_NUM	(	dax,
		ori		)

Value:

( (ORIENT_xyzint[(ori)] == ORIENT_xyzint[(dax)->xxorient]) ? (dax)->nxx : \
     (ORIENT_xyzint[(ori)] == ORIENT_xyzint[(dax)->yyorient]) ? (dax)->nyy : \
     (ORIENT_xyzint[(ori)] == ORIENT_xyzint[(dax)->zzorient]) ? (dax)->nzz : 0 )

Definition at line 1302 of file 3ddata.h.

Referenced by main(), and THD_dataset_info().

#define DAXES_XCEN

(

dax

)

((dax)->xxorg + 0.5*((dax)->nxx - 1) * (dax)->xxdel)

Center of grid in x-direction.

Definition at line 1293 of file 3ddata.h.

#define DAXES_YCEN

(

dax

)

((dax)->yyorg + 0.5*((dax)->nyy - 1) * (dax)->yydel)

Center of grid in y-direction.

Definition at line 1296 of file 3ddata.h.

#define DAXES_ZCEN

(

dax

)

((dax)->zzorg + 0.5*((dax)->nzz - 1) * (dax)->zzdel)

Center of grid in z-direction.

Definition at line 1299 of file 3ddata.h.

#define DBLK_anyize

(

)

THD_force_malloc_type((db),DATABLOCK_MEM_ANY)

Don't care how bricks are allocated.

Definition at line 1084 of file 3ddata.h.

#define DBLK_ARRAY	(	db,
		iv		)	mri_data_pointer( DBLK_BRICK((db),(iv)) )

Definition at line 2254 of file 3ddata.h.

Referenced by ENTROPY_datablock(), THD_alloc_datablock(), THD_count_databricks(), THD_fetch_dataset(), THD_load_1D(), THD_load_3D(), THD_load_analyze(), THD_load_ctfmri(), THD_load_ctfsam(), THD_load_datablock(), THD_load_minc(), THD_load_mpeg(), THD_load_nifti(), THD_purge_datablock(), THD_purge_one_brick(), and THD_write_datablock().

#define DBLK_BRICK	(	db,
		iv		)	((db)->brick->imarr[(iv)])

Definition at line 2238 of file 3ddata.h.

Referenced by T3D_fix_dataset_dimen(), T3D_read_images(), THD_alloc_datablock(), THD_count_databricks(), THD_fetch_dataset(), THD_load_1D(), THD_load_3D(), THD_load_analyze(), THD_load_ctfmri(), THD_load_ctfsam(), THD_load_datablock(), THD_load_minc(), THD_load_mpeg(), THD_load_nifti(), THD_purge_datablock(), THD_purge_one_brick(), and THD_write_datablock().

#define DBLK_BRICK_ARRAY DBLK_ARRAY

Definition at line 2261 of file 3ddata.h.

#define DBLK_BRICK_BYTES	(	db,
		iv		)	((db)->brick_bytes[iv])

Definition at line 2277 of file 3ddata.h.

Referenced by ENTROPY_datablock(), THD_alloc_datablock(), THD_fetch_dataset(), THD_load_1D(), THD_load_3D(), THD_load_analyze(), THD_load_ctfmri(), THD_load_ctfsam(), THD_load_datablock(), THD_load_minc(), THD_load_mpeg(), THD_load_nifti(), and THD_write_datablock().

#define DBLK_BRICK_FACTOR	(	db,
		iv		)	((db)->brick_fac[(iv)])

Definition at line 2263 of file 3ddata.h.

Referenced by adwarp_refashion_dataset(), AFNI_refashion_dataset(), main(), r_fill_resampled_data_brick(), and THD_load_datablock().

#define DBLK_BRICK_KEYWORDS	(	db,
		iv		)	( ((db)->brick_keywords != NULL) ? ((db)->brick_keywords[iv]) : NULL )

Definition at line 2562 of file 3ddata.h.

#define DBLK_BRICK_LAB	(	db,
		iv		)	( ((db)->brick_lab != NULL) ? ((db)->brick_lab[iv]) : "?" )

Definition at line 2514 of file 3ddata.h.

#define DBLK_BRICK_NVOX	(	db,
		iv		)	(DBLK_BRICK((db),(iv))->nvox)

Return the number of voxels in the iv-th volume of dataset ds

Definition at line 2252 of file 3ddata.h.

Referenced by THD_fetch_dataset(), THD_load_analyze(), THD_load_ctfmri(), THD_load_datablock(), THD_load_nifti(), and THD_write_datablock().

#define DBLK_BRICK_STATAUX	(	db,
		iv		)	( ((db)->brick_stataux != NULL) ? (db)->brick_stataux[iv] : NULL )

Definition at line 2538 of file 3ddata.h.

#define DBLK_BRICK_STATCODE	(	db,
		iv		)	( ((db)->brick_statcode != NULL) ? (db)->brick_statcode[iv] : ILLEGAL_TYPE )

Definition at line 2526 of file 3ddata.h.

#define DBLK_BRICK_STATPAR	(	db,
		iv,
		jj	)	( ((db)->brick_stataux != NULL) ? (db)->brick_stataux[iv][jj] : 0.0 )

Definition at line 2552 of file 3ddata.h.

#define DBLK_BRICK_TYPE	(	db,
		iv		)	(DBLK_BRICK((db),(iv))->kind)

Definition at line 2244 of file 3ddata.h.

Referenced by adwarp_refashion_dataset(), AFNI_refashion_dataset(), T3D_save_file_CB(), THD_datablock_from_atr(), THD_datum_constant(), THD_fetch_dataset(), THD_init_datablock_brick(), THD_load_analyze(), THD_load_ctfmri(), THD_load_datablock(), THD_load_minc(), THD_load_mpeg(), THD_load_nifti(), THD_set_dataset_attributes(), THD_setup_mastery(), and THD_write_datablock().

#define DBLK_BYTEORDER

(

)

((db)->diskptr->byte_order)

Definition at line 2344 of file 3ddata.h.

#define DBLK_IS_1D

(

)

Value:

( ISVALID_DBLK(db) && ISVALID_DISKPTR((db)->diskptr) &&     \
                         (db)->diskptr->storage_mode == STORAGE_BY_1D )

Determine if datablock db is stored in a 1D file on disk

Definition at line 2153 of file 3ddata.h.

#define DBLK_IS_3D

(

)

Value:

( ISVALID_DBLK(db) && ISVALID_DISKPTR((db)->diskptr) &&     \
                         (db)->diskptr->storage_mode == STORAGE_BY_3D )

Determine if datablock db is stored in a 3D file on disk

Definition at line 2158 of file 3ddata.h.

#define DBLK_IS_ANALYZE

(

)

Value:

( ISVALID_DBLK(db) && ISVALID_DISKPTR((db)->diskptr) && \
                              (db)->diskptr->storage_mode == STORAGE_BY_ANALYZE )

Determine if datablock db is stored in a ANALYZE file on disk

Definition at line 2120 of file 3ddata.h.

Referenced by THD_write_atr(), and THD_write_datablock().

#define DBLK_IS_CTFMRI

(

)

Value:

( ISVALID_DBLK(db) && ISVALID_DISKPTR((db)->diskptr) && \
                             (db)->diskptr->storage_mode == STORAGE_BY_CTFMRI )

Determine if datablock db is stored in a CTFMRI file on disk

Definition at line 2131 of file 3ddata.h.

Referenced by THD_write_atr().

#define DBLK_IS_CTFSAM

(

)

Value:

( ISVALID_DBLK(db) && ISVALID_DISKPTR((db)->diskptr) && \
                             (db)->diskptr->storage_mode == STORAGE_BY_CTFSAM )

Determine if datablock db is stored in a CTFSAM file on disk

Definition at line 2142 of file 3ddata.h.

Referenced by THD_write_atr().

#define DBLK_IS_MALLOC

(

)

((db)->malloc_type == DATABLOCK_MEM_MALLOC)

Test if brick is set to be malloc()-ed.

Definition at line 1088 of file 3ddata.h.

#define DBLK_IS_MASTERED

(

)

((db)->master_nvals > 0 && (db)->master_ival != NULL && (db)->master_bytes != NULL)

Check if brick is mastered from another dataset.

Definition at line 1119 of file 3ddata.h.

Referenced by THD_delete_datablock(), THD_load_datablock(), and THD_write_datablock().

#define DBLK_IS_MINC

(

)

Value:

( ISVALID_DBLK(db) && ISVALID_DISKPTR((db)->diskptr) && \
                           (db)->diskptr->storage_mode == STORAGE_BY_MINC )

Determine if datablock db is stored in a MINC file on disk

Definition at line 2109 of file 3ddata.h.

Referenced by THD_write_atr(), and THD_write_datablock().

#define DBLK_IS_MMAP

(

)

((db)->malloc_type == DATABLOCK_MEM_MMAP)

Test if brick is set to be mmap()-ed.

Definition at line 1092 of file 3ddata.h.

#define DBLK_IS_MPEG

(

)

Value:

( ISVALID_DBLK(db) && ISVALID_DISKPTR((db)->diskptr) && \
                           (db)->diskptr->storage_mode == STORAGE_BY_MPEG )

Determine if datablock db is stored in a MPEG file on disk

Definition at line 2199 of file 3ddata.h.

Referenced by THD_write_atr().

#define DBLK_IS_NIFTI

(

)

Value:

( ISVALID_DBLK(db) && ISVALID_DISKPTR((db)->diskptr) &&  \
                           (db)->diskptr->storage_mode == STORAGE_BY_NIFTI )

Determine if datablock db is stored in a NIFTI file on disk

Definition at line 2163 of file 3ddata.h.

Referenced by THD_write_atr(), and THD_write_datablock().

#define DBLK_IS_SHARED

(

)

((db)->malloc_type == DATABLOCK_MEM_SHARED)

Test if brick is set to be shared.

Definition at line 1096 of file 3ddata.h.

#define DBLK_IS_VOLUMES

(

)

Value:

( ISVALID_DBLK(db) &&                                \
                              ISVALID_DISKPTR((db)->diskptr) &&                  \
                              (db)->diskptr->storage_mode == STORAGE_BY_VOLUMES )

Determine if datablock db is stored by volume files rather than 1 big BRIK

Definition at line 2186 of file 3ddata.h.

#define DBLK_lock

(

)

((db)->locked = 1)

Lock bricks in memory.

Definition at line 1104 of file 3ddata.h.

#define DBLK_LOCKED

(

)

((db)->locked)

Test if brick is locked into memory.

Definition at line 1112 of file 3ddata.h.

Referenced by AFNI_misc_CB(), THD_force_malloc_type(), THD_purge_datablock(), and THD_purge_one_brick().

#define DBLK_mallocize

(

)

THD_force_malloc_type((db),DATABLOCK_MEM_MALLOC)

Force bricks to be allocated with malloc().

Definition at line 1076 of file 3ddata.h.

#define DBLK_mmapfix

(

)

Value:

do{ if( (db)->malloc_type==DATABLOCK_MEM_MMAP && (db)->total_bytes>TWOGIG ) \
        (db)->malloc_type = DATABLOCK_MEM_MALLOC ; } while(0)

Definition at line 2750 of file 3ddata.h.

Referenced by adwarp_refashion_dataset(), AFNI_refashion_dataset(), THD_datablock_from_atr(), THD_force_malloc_type(), THD_load_datablock(), and THD_write_datablock().

#define DBLK_mmapize

(

)

THD_force_malloc_type((db),DATABLOCK_MEM_MMAP)

Force bricks to be allocated with mmap().

Definition at line 1080 of file 3ddata.h.

#define DBLK_shareize

(

)

THD_force_malloc_type((db),DATABLOCK_MEM_SHARED)

Force bricks to be allocated in shared memory.

Definition at line 1100 of file 3ddata.h.

#define DBLK_superlock

(

)

((db)->locked = 2)

Superlock brick in memory. Can only be undone by explicit access to db->locked.

Definition at line 1115 of file 3ddata.h.

#define DBLK_unlock

(

)

((db)->locked = ((db)->locked<2) ? 0 : 2)

Unlock bricks from memory, if they aren't "superlocked".

Definition at line 1108 of file 3ddata.h.

Referenced by duplicate_dataset(), EDIT_empty_copy(), EDIT_empty_datablock(), and THD_init_one_datablock().

#define DEFAULT_RESAMPLE_VOX 1.0

Default resampling grid size (in mm).

Definition at line 1198 of file 3ddata.h.

#define DELTA_AFTER 1

Definition at line 3540 of file 3ddata.h.

Referenced by main(), NUD_rotate(), parset_affine(), and rotate_stdin_points().

#define DELTA_BEFORE 2

Definition at line 3541 of file 3ddata.h.

Referenced by main(), parset_affine(), rot_to_shear(), and rotate_stdin_points().

#define DELTA_FIXED 3

Definition at line 3542 of file 3ddata.h.

Referenced by main(), and rot_to_shear().

#define DESTROY_SARR

(

name

)

Value:

do{ if( (name) != NULL ){    \
     KILL_KILL((name)->kl) ;  \
     myXtFree( (name)->ar ) ; \
     myXtFree( (name) ) ; } } while(0)

Kill all entries in the dynamic string array "name".

Definition at line 328 of file 3ddata.h.

Referenced by AFNI_read_inputs(), AFNI_rescan_timeseries_CB(), ISQ_saver_CB(), NLFIT_get_all_MODELs(), NLFIT_get_many_MODELs(), PLUG_get_all_plugins(), PLUG_get_many_plugins(), THD_extract_directories(), THD_extract_regular_files(), THD_get_all_executables(), THD_get_all_subdirs(), THD_get_all_timeseries(), THD_get_many_timeseries(), THD_getpathprogs(), THD_init_alldir_datablocks(), THD_normalize_flist(), and TT_whereami().

#define DESTROY_XTARR FREE_XTARR

Duplicate definition for FREE_XTARR

Definition at line 271 of file 3ddata.h.

Referenced by AFNI_add_interruptable().

#define DETREND_const	(	n,
		f		)	THD_const_detrend(n,f,NULL)

Definition at line 3472 of file 3ddata.h.

#define DETREND_cubic	(	n,
		f		)	THD_cubic_detrend(n,f)

Definition at line 3471 of file 3ddata.h.

#define DETREND_linear	(	n,
		f		)	THD_linear_detrend(n,f,NULL,NULL)

Definition at line 3469 of file 3ddata.h.

#define DETREND_polort	(	p,
		n,
		f	)

Value:

do{ switch(p){ default:                         break;  \
                 case 0: DETREND_const(n,f)    ; break;  \
                 case 1: DETREND_linear(n,f)   ; break;  \
                 case 2: DETREND_quadratic(n,f); break;  \
                 case 3: DETREND_cubic(n,f)    ; break; } } while(0)

Macro to detrend a time series array in to various polynomial orders.

Definition at line 3476 of file 3ddata.h.

Referenced by main().

#define DETREND_quadratic	(	n,
		f		)	THD_quadratic_detrend(n,f,NULL,NULL,NULL)

Definition at line 3470 of file 3ddata.h.

#define DISKPTR_TYPE 47

Definition at line 890 of file 3ddata.h.

#define DOOMED 665

A marker that defines a dataset that is about to be killed.

Definition at line 2025 of file 3ddata.h.

Referenced by AFNI_andersonville(), and AFNI_mark_for_death().

#define DSET_anyize

(

)

DBLK_anyize((ds)->dblk)

Let AFNI decide how to load a dataset into memory.

May choose mmap() or malloc()

Definition at line 2720 of file 3ddata.h.

Referenced by DRAW_done_CB(), DRAW_quit_CB(), DRAW_saveas_finalize_CB(), NUD_finalize_dset_CB(), NUD_quit_CB(), and r_save_dataset_as().

#define DSET_ARRAY	(	ds,
		iv		)	DBLK_ARRAY((ds)->dblk,(iv))

Return the pointer to the actual data in the iv-th volume of dataset ds

Definition at line 2258 of file 3ddata.h.

Referenced by AFNI_dataset_slice(), AFNI_fimmer_compute(), AFNI_misc_CB(), applyMask(), BFIT_main(), BFIT_prepare_dataset(), CALC_read_opts(), CORREL_main(), DRAW_ttatlas_CB(), DSET_cor(), dset_to_mri(), edgeDetect(), EDIT_main(), EDIT_one_dataset(), eval_registration(), FD_brick_to_mri(), FD_brick_to_series(), fill_afni_struct(), fim3d_fimmer_compute(), Fourier_Filter_Driver(), get_options(), HISTO_main(), IMREG_main(), load_histo(), main(), MAKER_4D_to_typed_fbuc(), MAKER_4D_to_typed_fim(), MAKER_4D_to_typed_fith(), MASKAVE_main(), PC_read_opts(), PERMTEST_compute(), PLUTO_4D_to_nothing(), POWER_main(), process_as_floats(), process_data(), r_set_afni_s_from_dset(), RCREND_overlay_ttatlas(), RCREND_reload_dataset(), RCREND_reload_func_dset(), remove_isolated_stuff(), REND_overlay_ttatlas(), REND_reload_dataset(), REND_reload_func_dset(), REORDER_main(), ROIPLOT_main(), RT_fim_recurse(), SCAT_main(), SUMA_Get_isosurface_datasets(), SUMA_LoadPrepInVol(), SUMA_SurfGridIntersect(), THD_add_bricks(), THD_autonudge(), THD_copy_dset_subs(), THD_extract_array(), THD_extract_float_brick(), THD_extract_many_series(), THD_get_dset_row(), THD_get_voxel(), THD_insert_series(), THD_load_tcat(), THD_makemask(), thd_mask_from_brick(), THD_put_dset_row(), THD_subbrick_to_niml(), THD_write_1D(), THD_write_minc(), THD_write_nifti(), THD_zerofill_dataset(), THRESH_compute(), and UC_read_opts().

#define DSET_BRICK	(	ds,
		iv		)	DBLK_BRICK((ds)->dblk,(iv))

Return the MRI_IMAGE * that is the iv-th volume of dataset ds

Definition at line 2242 of file 3ddata.h.

Referenced by AFNI_fimmer_compute(), AFNI_read_images(), AFNI_vnlist_func_overlay(), AFNI_vol2surf_func_overlay(), DRAW_fillin_CB(), EDIT_main(), EDIT_substitute_brick(), fim3d_fimmer_compute(), main(), NUD_doall_CB(), NUD_nudge_CB(), output_ts_array(), PERMTEST_main(), RCREND_reload_dataset(), RCREND_reload_func_dset(), REND_reload_dataset(), REND_reload_func_dset(), RT_fim_recurse(), RT_registration_3D_onevol(), RT_registration_3D_setup(), THD_cmass(), THD_extract_float_brick(), THD_load_statistics(), THD_load_tcat(), THD_mean_brick(), THD_median_brick(), THD_rms_brick(), THD_update_one_bstat(), THD_update_statistics(), THD_warp3D(), THD_zerofill_dataset(), THD_zeropad(), THRESH_main(), VL_command_line(), VOLREG_main(), write_3dtime(), write_afni_data(), write_afni_fict(), write_afni_fizt(), and write_ts_array().

#define DSET_BRICK_ARRAY DSET_ARRAY

Definition at line 2260 of file 3ddata.h.

Referenced by center_of_mass(), copy_dset(), COPY_main(), DRAW_copy_dset(), DRAW_into_dataset(), DRAW_receiver(), EDIT_full_copy(), estpdf_initialize(), initialize_program(), main(), process_NIML_Node_ROI(), r_init_afni_vars(), r_init_Alg_values(), remove_field(), resample(), RT_registration_2D_onevol(), RT_registration_2D_setup(), segment_x_slices(), segment_y_slices(), segment_z_slices(), SUMA_FormAfnidset(), target_into_dataset(), TT_whereami(), and WINsorize().

#define DSET_BRICK_BYTES	(	ds,
		iv		)	DBLK_BRICK_BYTES((ds)->dblk,(iv))

Return number of bytes stored in the iv-th volume of dataset ds

Definition at line 2281 of file 3ddata.h.

Referenced by AFNI_fimmer_compute(), AFNI_read_inputs(), CALC_read_opts(), copy_dset(), COPY_main(), DRAW_copy_dset(), EDIT_full_copy(), fim3d_fimmer_compute(), main(), RT_fim_recurse(), THD_write_nifti(), and THD_zerofill_dataset().

#define DSET_BRICK_FACTOR	(	ds,
		iv		)	DBLK_BRICK_FACTOR((ds)->dblk,(iv))

Return the brick scaling factor of the iv-th volume of dataset ds.

If the scale factor is 0, then the brick is used "as-is"; that is, the effective scale factor is 1. You can assign to this macro as in "DSET_BRICK_FACTOR(ds,iv)=3.2;" but I don't recommend this. Instead, do something like "EDIT_BRICK_FACTOR(ds,iv,3.2);" (see

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