AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Anonymous User
November 06, 2012 03:43PM
heh there's an error:
Quote

GagansMacPro:macosx_10.7_Intel_64 Gagan$ 3dAllineate -help | grep 'maximum number'
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /usr/local/lib/libgomp.1.dylib
Expected in: /usr/local/lib/libgcc_s.1.dylib

dyld: Symbol not found: ___emutls_get_address
Referenced from: /usr/local/lib/libgomp.1.dylib
Expected in: /usr/local/lib/libgcc_s.1.dylib

GagansMacPro:macosx_10.7_Intel_64 Gagan$ 3dAllineate
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /usr/local/lib/libgomp.1.dylib
Expected in: /usr/local/lib/libgcc_s.1.dylib

dyld: Symbol not found: ___emutls_get_address
Referenced from: /usr/local/lib/libgomp.1.dylib
Expected in: /usr/local/lib/libgcc_s.1.dylib

however among the binaries that do work, such as 3dvolreg, only 1 thread is being used. I assume this is apart of afni?

this error seems like a linking error that should be fixable if compiled from source.

I'm trying to use the makefile from 10.6 to compile, as it seems to play nicer...

It seems the big issue is linking the right libraries.
Subject Author Posted

undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Anonymous User November 06, 2012 02:07PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

ziad November 06, 2012 02:29PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Anonymous User November 06, 2012 02:46PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

ziad November 06, 2012 03:19PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Anonymous User November 06, 2012 03:43PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Peter Molfese November 06, 2012 04:33PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Anonymous User November 06, 2012 03:43PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Bob Cox November 06, 2012 04:36PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Anonymous User November 06, 2012 06:51PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Robert Renden April 25, 2013 01:43PM