AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 06, 2012 04:36PM
3dvolreg is not OpenMP-ized -- it is so fast already that it wasn't worth the effort to retrofit it.

Try typing something like

3dAllineate -help

(or use 3dLocalstat, or 3dREMLfit, or a bunch of others that ARE OpenMP-ized). The end of the help output should tell you if the program is compiled for OpenMP.

The Xft errors are coming from a missing XFreeType library, which might actually be present on your system but not in a 64-bit mode. I don't recall offhand where to get Xft from on the Web, though.

If you are compiling yourself, which compiler are you using. I believe that the Apple C compiler no longer supports OpenMP, and you'll have to install gcc to get OpenMP to work.
Subject Author Posted

undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Anonymous User November 06, 2012 02:07PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

ziad November 06, 2012 02:29PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Anonymous User November 06, 2012 02:46PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

ziad November 06, 2012 03:19PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Anonymous User November 06, 2012 03:43PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Peter Molfese November 06, 2012 04:33PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Anonymous User November 06, 2012 03:43PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Bob Cox November 06, 2012 04:36PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Anonymous User November 06, 2012 06:51PM

Re: undefined symbols problem AFNI from src on OSX 10.8.2 with OpenMP

Robert Renden April 25, 2013 01:43PM