AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
March 14, 2013 01:31PM
You may use either afni_proc.py or align_epi_anat.py. Motion parameters are saved, and only a single interpolation is applied to the epi data in the combined transformation that includes motion correction and alignment to anatomical data. Because the anatomical base data is from a separate session, you will likely need the "-giant_move" option for the alignment of epi to anatomical.
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Subject Author Posted

Preprocessing

Isa March 11, 2013 01:19PM

Re: Preprocessing

Daniel Glen March 11, 2013 03:12PM

Re: Preprocessing

rick reynolds March 11, 2013 03:52PM

Re: Preprocessing

Isa March 14, 2013 11:06AM

Re: Preprocessing

Daniel Glen March 14, 2013 01:31PM

Re: Preprocessing

rick reynolds March 17, 2013 09:48PM