AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
March 17, 2013 09:48PM
Hi Isa,

Since your EPIs are across sessions, you should probably
align them within a session, and then each session to the
same anatomy. This is not optimal though.

Given that, it might be good to use @auto_tlrc and then
align_epi_anat.py yourself, and then have afni_proc.py
finish it off.

Otherwise, you could take the proc script, add a second
align_epi_anat.py command (for the second EPI base),
and modify it to catentate transformations for each EPI
base. Hmmm, maybe that is getting dangerous. Running
AEA.py before AP.py might be easier.

- rick
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Subject Author Posted

Preprocessing

Isa March 11, 2013 01:19PM

Re: Preprocessing

Daniel Glen March 11, 2013 03:12PM

Re: Preprocessing

rick reynolds March 11, 2013 03:52PM

Re: Preprocessing

Isa March 14, 2013 11:06AM

Re: Preprocessing

Daniel Glen March 14, 2013 01:31PM

Re: Preprocessing

rick reynolds March 17, 2013 09:48PM