AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 23, 2010 10:25AM
Hi all,

I'm completely new to anatomical-based analyses and Freesurfer, so please excuse me if I sound a bit naive.

I want to look at cortical thickness from data that has been processed with Freesurfer, but it seems as though my model is too complex for traditional ways of group analysis in Freesurfer.

Someone suggested that I might be able to project the cortical thickness values to a 3D volume and analyze in AFNI. There was a post on the Freesurfer message board a few months ago about converting thickness files to NIFTI files, but had no response.

Is this possible? If so, how would I go about doing this? If not, any other suggestions?

Thanks very much in advance!
Courtney

Subject Author Posted

Analyzing freesurfer cortical thickness maps in AFNI

Courtney Gallen December 23, 2010 10:25AM

Re: Analyzing freesurfer cortical thickness maps in AFNI

rick reynolds December 23, 2010 12:16PM

loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 06, 2014 02:16AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Peter Molfese January 06, 2014 04:15AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 07, 2014 03:07AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

ziad January 06, 2014 10:00AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 07, 2014 03:06AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

ziad January 07, 2014 09:31AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 07, 2014 07:53PM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

ziad January 09, 2014 12:43PM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 15, 2014 04:46AM

Re: Analyzing freesurfer cortical thickness maps in AFNI

Kristina Simonyan January 03, 2011 03:48PM

Re: Analyzing freesurfer cortical thickness maps in AFNI

Naveed January 07, 2014 06:46AM