AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 09, 2014 12:43PM
So for some reason the message board software is refusing to display your last response containing the result of your 'ls' command. But I had a copy emailed to me. It is strange that I do not see an mri/ directory that would contain all of the volumes like "lh.ribbon.mgz", "orig/orig.mgz", and directories such as "orig/" "transforms/" etc. You do have these directories and volumes but they are not under the typical FreeSurfer directory structure. Could it be that they got move accidentally out of the mri/ directory?

Consider recreating ./mri , move ONLY the items you in your posted listing between "lh.ribbon.mgz" and "wm.seg.mgz", including these two limiting files.
Delete the SUMA/ directory and then try rerunning @SUMA_Make_Spec_FS ...

cheers,
Ziad
Subject Author Posted

Analyzing freesurfer cortical thickness maps in AFNI

Courtney Gallen December 23, 2010 10:25AM

Re: Analyzing freesurfer cortical thickness maps in AFNI

rick reynolds December 23, 2010 12:16PM

loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 06, 2014 02:16AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Peter Molfese January 06, 2014 04:15AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 07, 2014 03:07AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

ziad January 06, 2014 10:00AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 07, 2014 03:06AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

ziad January 07, 2014 09:31AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 07, 2014 07:53PM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

ziad January 09, 2014 12:43PM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 15, 2014 04:46AM

Re: Analyzing freesurfer cortical thickness maps in AFNI

Kristina Simonyan January 03, 2011 03:48PM

Re: Analyzing freesurfer cortical thickness maps in AFNI

Naveed January 07, 2014 06:46AM