AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 06, 2014 02:16AM
Hi,
I want to know that how can I convert FreeSurfer .thickness files to AFNI readable format
I tried the following Command but it gives error


mri_convert /home/naveed/freesurfer/subjects/CHR01/surf/rh.thickness /media/Freesurfer_Data/Processed/AFNI_format/CHR/CHR01/rh.brik
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/naveed/freesurfer/subjects/CHR01/surf/rh.thickness...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
writing to /media/Freesurfer_Data/Processed/AFNI_format/CHR/CHR01/rh.brik...
AFNI BRIK write unsupported
ERROR: failure writing /media/Freesurfer_Data/Processed/AFNI_format/CHR/CHR01/rh.brik
UN:/media>

Please let me help me to solve this problem
Thank you :)

Naveed
Subject Author Posted

Analyzing freesurfer cortical thickness maps in AFNI

Courtney Gallen December 23, 2010 10:25AM

Re: Analyzing freesurfer cortical thickness maps in AFNI

rick reynolds December 23, 2010 12:16PM

loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 06, 2014 02:16AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Peter Molfese January 06, 2014 04:15AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 07, 2014 03:07AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

ziad January 06, 2014 10:00AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 07, 2014 03:06AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

ziad January 07, 2014 09:31AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 07, 2014 07:53PM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

ziad January 09, 2014 12:43PM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 15, 2014 04:46AM

Re: Analyzing freesurfer cortical thickness maps in AFNI

Kristina Simonyan January 03, 2011 03:48PM

Re: Analyzing freesurfer cortical thickness maps in AFNI

Naveed January 07, 2014 06:46AM