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January 06, 2014 02:16AM
Hi,
I want to know that how can I convert FreeSurfer .thickness files to AFNI readable format
I tried the following Command but it gives error


mri_convert /home/naveed/freesurfer/subjects/CHR01/surf/rh.thickness /media/Freesurfer_Data/Processed/AFNI_format/CHR/CHR01/rh.brik
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/naveed/freesurfer/subjects/CHR01/surf/rh.thickness...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
writing to /media/Freesurfer_Data/Processed/AFNI_format/CHR/CHR01/rh.brik...
AFNI BRIK write unsupported
ERROR: failure writing /media/Freesurfer_Data/Processed/AFNI_format/CHR/CHR01/rh.brik
UN:/media>

Please let me help me to solve this problem
Thank you :)

Naveed
Subject Author Posted

Analyzing freesurfer cortical thickness maps in AFNI

Courtney Gallen December 23, 2010 10:25AM

Re: Analyzing freesurfer cortical thickness maps in AFNI

rick reynolds December 23, 2010 12:16PM

loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 06, 2014 02:16AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Peter Molfese January 06, 2014 04:15AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 07, 2014 03:07AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

ziad January 06, 2014 10:00AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 07, 2014 03:06AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

ziad January 07, 2014 09:31AM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 07, 2014 07:53PM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

ziad January 09, 2014 12:43PM

Re: loading .thickness files of T1 MRI from FreeSurfer into AFNI

Naveed January 15, 2014 04:46AM

Re: Analyzing freesurfer cortical thickness maps in AFNI

Kristina Simonyan January 03, 2011 03:48PM

Re: Analyzing freesurfer cortical thickness maps in AFNI

Naveed January 07, 2014 06:46AM