AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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otto
July 17, 2013 08:41PM
Hi,

When we run our research studies, we also acquire a DTI sequence and an anatomical image as part of our fMRI protocol, thus the archive CD has in addition to the fMRI runs also a DTI sequence and a volumetric file.

When I use the command

dimon -infile_pattern '/Volumes/REBECCA/08181727/*' -dicom_org -show_sorted_list -quit

dimon shows me all the sequences ("runs") 2,6,10,14,15 and 19. But when I try to make a dataset using the command

dimon -infile_pattern '/Volumes/REBECCA/08181727/*' -dicom_org -gert_create_dataset

I am only getting the first three runs (2,6,10) which are fMRI sequences. It appears dimon is getting confused when encountering the DTI sequence (run 14). How can I get the runs 15 (fMRI) and run 19 (voumetric T1)?

Many thanks - Otto
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Subject Author Posted

Otto: dimon quits when encountering DTI sequence on CD

otto July 17, 2013 08:41PM

Re: Otto: dimon quits when encountering DTI sequence on CD

Peter Molfese July 17, 2013 09:57PM

Otto: @move.to.series.dirs works

otto July 18, 2013 08:09PM

Re: Otto: dimon quits when encountering DTI sequence on CD

rick reynolds July 18, 2013 10:29AM

Otto: group analysis tutorial?

otto July 18, 2013 08:18PM

Re: Otto: group analysis tutorial?

rick reynolds July 19, 2013 10:27AM

Re: Otto: group analysis tutorial?

otto July 19, 2013 05:57PM