AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 20, 2013 07:45PM
Hi Isaac,

Hard to tell without experimenting what would do best. Usually the options I try first would be -shrink_fac, -init_radius. You can also try to uniformize the volume with 3dUnifize before running 3dSkullStrip.
Lastly, consider running the program in -visual mode to get a feel for what is going on.

cheers,
ziad
Subject Author Posted

3dSkullStrip and nonlinear registration

Isaac Schwabacher November 20, 2013 05:31PM

Re: 3dSkullStrip and nonlinear registration

ziad November 20, 2013 07:45PM

Re: 3dSkullStrip and nonlinear registration

Peter Molfese November 20, 2013 09:48PM

Re: 3dSkullStrip and nonlinear registration

Isaac Schwabacher November 21, 2013 11:13AM

Re: 3dSkullStrip and nonlinear registration

Mingbo November 21, 2013 12:25PM

Re: 3dSkullStrip and nonlinear registration

Peter Molfese November 21, 2013 01:26PM