AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Peter Molfese
November 20, 2013 09:48PM
I've also had some problems with residual dura affecting the nonlinear warp. -init_radius works somewhat for me, though I've also started using the Skull Strip from Freesurfer. I find that the -gcut option works incredibly well in many cases. Like everything else, it doesn't work all the time.

[surfer.nmr.mgh.harvard.edu]
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Subject Author Posted

3dSkullStrip and nonlinear registration

Isaac Schwabacher November 20, 2013 05:31PM

Re: 3dSkullStrip and nonlinear registration

ziad November 20, 2013 07:45PM

Re: 3dSkullStrip and nonlinear registration

Peter Molfese November 20, 2013 09:48PM

Re: 3dSkullStrip and nonlinear registration

Isaac Schwabacher November 21, 2013 11:13AM

Re: 3dSkullStrip and nonlinear registration

Mingbo November 21, 2013 12:25PM

Re: 3dSkullStrip and nonlinear registration

Peter Molfese November 21, 2013 01:26PM