Hi,
I have written the following script for the Anova analysis. Please let me know if it is correct or I need to change something in it.
# For the 2-way Anova
set dir_chr = /media/sf_D_DRIVE/Freesurfer_Data/Processed/CHR
set dir_cnt = /media/sf_D_DRIVE/Freesurfer_Data/Processed/CNT
set dir_fep = /media/sf_D_DRIVE/Freesurfer_Data/Processed/FEP
set dir_output = /media/sf_D_DRIVE/Freesurfer_Data/Processed
3dANOVA2 -type 3 -alevels 2 -blevels 3 \
-dset 2 1 ${dir_cnt}/CNT02/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT03/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT04/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT06/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT07/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT08/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT09/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT10/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT11/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT12/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT13/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT17/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT18/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT22/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT24/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT28/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT29/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT32/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT33/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT34/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT35/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT37/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT38/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT39/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT41/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT43/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT46/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT47/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT49/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT50/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT52/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT53/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT54/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT55/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 1 ${dir_cnt}/CNT56/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_cnt}/CNT58/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 2 ${dir_chr}/CHR01/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR03/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR05/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR06/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR07/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR08/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR09/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR14/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR18/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR19/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR20/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR21/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR22/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR23/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR25/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR26/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR27/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR28/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR30/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR31/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR32/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR34/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR35/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR36/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR38/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR39/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR40/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR41/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR42/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR43/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 1 2 ${dir_chr}/CHR45/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR48/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR49/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR50/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 3 ${dir_fep}/FEP02/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP03/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP04/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP06/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP07/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP08/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP09/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP10/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP11/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP12/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP13/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP17/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP18/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP22/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP24/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP28/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP29/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP32/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP33/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP34/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP35/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP37/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP38/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP39/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP41/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP43/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP46/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP47/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP49/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP50/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP52/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP53/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP54/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP55/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 1 3 ${dir_fep}/FEP56/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 2 3 ${dir_fep}/FEP58/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-fa F_condition \
-bucket ${dir_output}/stats_anova \
-diskspace
Thanks
Naveed