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Naveed

March 04, 2014 09:27PM

Registered: 10 years ago
Posts: 67

Hi Gang,
I have modified my code as follows but stilli receive error on execution

# For the 2-way Anova
# alevels = Diagnosis groups 1 = CNT, 2 = CHR, 3 = FEP
# blevel = No of subjects per group = 28 each

set dir_chr = /media/sf_D_DRIVE/Freesurfer_Data/Processed/CHR
set dir_cnt = /media/sf_D_DRIVE/Freesurfer_Data/Processed/CNT
set dir_fep = /media/sf_D_DRIVE/Freesurfer_Data/Processed/FEP
set dir_output = /media/sf_D_DRIVE/Freesurfer_Data/Processed

3dANOVA2 -type 1 -alevels 3 -blevels 28/
-dset 1 1 ${dir_cnt}/CNT02/SUMA/std.60.lh.thickness.niml.dset '[0]'
-dset 1 2 ${dir_cnt}/CNT03/SUMA/std.60.lh.thickness.niml.dset '[0]'
-dset 1 3 ${dir_cnt}/CNT04/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 4 ${dir_cnt}/CNT06/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 5 ${dir_cnt}/CNT07/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 6 ${dir_cnt}/CNT08/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 7 ${dir_cnt}/CNT09/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 8 ${dir_cnt}/CNT10/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 9 ${dir_cnt}/CNT11/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 10 ${dir_cnt}/CNT12/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 11 ${dir_cnt}/CNT13/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 12 ${dir_cnt}/CNT17/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 13 ${dir_cnt}/CNT18/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 14 ${dir_cnt}/CNT22/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 15 ${dir_cnt}/CNT24/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 16 ${dir_cnt}/CNT28/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 17 ${dir_cnt}/CNT29/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 18 ${dir_cnt}/CNT32/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 19 ${dir_cnt}/CNT33/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 20 ${dir_cnt}/CNT34/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 21 ${dir_cnt}/CNT35/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 22 ${dir_cnt}/CNT37/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 23 ${dir_cnt}/CNT38/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 24 ${dir_cnt}/CNT39/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 25 ${dir_cnt}/CNT41/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 26 ${dir_cnt}/CNT43/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 27 ${dir_cnt}/CNT46/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 1 28 ${dir_cnt}/CNT47/SUMA/std.60.lh.thickness.niml.dset '[0]' \
-dset 2 1 ${dir_chr}/CHR01/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 2 ${dir_chr}/CHR03/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 3 ${dir_chr}/CHR05/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 4 ${dir_chr}/CHR06/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 5 ${dir_chr}/CHR07/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 6 ${dir_chr}/CHR08/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 7 ${dir_chr}/CHR09/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 8 ${dir_chr}/CHR14/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 9 ${dir_chr}/CHR18/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 10 ${dir_chr}/CHR19/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 11 ${dir_chr}/CHR20/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 12 ${dir_chr}/CHR21/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 13 ${dir_chr}/CHR22/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 14 ${dir_chr}/CHR23/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 15 ${dir_chr}/CHR25/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 16 ${dir_chr}/CHR26/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 17 ${dir_chr}/CHR27/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 18 ${dir_chr}/CHR28/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 19 ${dir_chr}/CHR30/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 20 ${dir_chr}/CHR31/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 21 ${dir_chr}/CHR32/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 22 ${dir_chr}/CHR34/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 23 ${dir_chr}/CHR35/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 24 ${dir_chr}/CHR36/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 25 ${dir_chr}/CHR38/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 26 ${dir_chr}/CHR39/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 27 ${dir_chr}/CHR40/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 2 28 ${dir_chr}/CHR41/SUMA/std.60.lh.thickness.niml.dset '[1]' \
-dset 3 1 ${dir_fep}/FEP01/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 2 ${dir_fep}/FEP03/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 3 ${dir_fep}/FEP04/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 4 ${dir_fep}/FEP05/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 5 ${dir_fep}/FEP06/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 6 ${dir_fep}/FEP07/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 7 ${dir_fep}/FEP08/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 8 ${dir_fep}/FEP09/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 9 ${dir_fep}/FEP10/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 10 ${dir_fep}/FEP11/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 11 ${dir_fep}/FEP12/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 12 ${dir_fep}/FEP13/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 13 ${dir_fep}/FEP14/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 14 ${dir_fep}/FEP15/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 15 ${dir_fep}/FEP16/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 16 ${dir_fep}/FEP17/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 17 ${dir_fep}/FEP19/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 18 ${dir_fep}/FEP20/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 19 ${dir_fep}/FEP21/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 20 ${dir_fep}/FEP22/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 21 ${dir_fep}/FEP23/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 22 ${dir_fep}/FEP24/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 23 ${dir_fep}/FEP25/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 24 ${dir_fep}/FEP26/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 25 ${dir_fep}/FEP28/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 26 ${dir_fep}/FEP29/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 27 ${dir_fep}/FEP30/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-dset 3 28 ${dir_fep}/FEP31/SUMA/std.60.lh.thickness.niml.dset '[2]' \
-fa F_condition \
-bucket ${dir_output}/stats_anova \
-diskspace

output error:
[naveed-centos@localhost ~/Desktop]$ ./anova_modified.csh
++ 3dANOVA: AFNI version=AFNI_2011_12_21_1014 (Oct 18 2013) [64-bit]
++ Authored by: B. Douglas Ward
** FATAL ERROR: Can't open dataset '/media/sf_D_DRIVE/Freesurfer_Data/Processed/CNT/CNT02/SUMA/std.60.lh.thickness.niml.dset'
** Program compile date = Oct 18 2013
-dset: Command not found.
[naveed-centos@localhost ~/Desktop]$ ./anova_modified.csh
++ 3dANOVA: AFNI version=AFNI_2011_12_21_1014 (Oct 18 2013) [64-bit]
++ Authored by: B. Douglas Ward
** FATAL ERROR: Can't open dataset '/media/sf_D_DRIVE/Freesurfer_Data/Processed/CNT/CNT02/SUMA/std.60.lh.thickness.niml.dset'
** Program compile date = Oct 18 2013
-dset: Command not found.

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Subject	Author	Posted
3dANOVA2 help	Naveed	March 04, 2014 05:02AM
Re: 3dANOVA2 help	gang	March 04, 2014 10:42AM
Re: 3dANOVA2 help	Naveed	March 04, 2014 08:07PM
Re: 3dANOVA2 help	gang	March 04, 2014 09:16PM
Re: 3dANOVA2 help	Naveed	March 04, 2014 09:27PM
Re: 3dANOVA2 help	gang	March 04, 2014 09:41PM
Re: 3dANOVA2 help	Naveed	March 04, 2014 11:10PM
Re: 3dANOVA2 help	Naveed	March 05, 2014 05:36AM
Re: 3dANOVA2 help	ziad	March 05, 2014 05:24PM
Re: 3dANOVA2 help	Naveed	March 05, 2014 08:45PM
Re: 3dANOVA2 help	gang	March 05, 2014 11:13PM