Hi,
I have solved the above issues now the new error is as follows
[naveed-centos@localhost ~/Desktop]$ ./anova_modified.csh
++ 3dANOVA: AFNI version=AFNI_2011_12_21_1014 (Oct 18 2013) [64-bit]
++ Authored by: B. Douglas Ward
Data set dimensions: nx = 49002 ny = 1 nz = 1 nxyz = 49002
** FATAL ERROR: Program 3dANOVA2: sample size is too small for fixed effects model
** Program compile date = Oct 18 2013
[naveed-centos@localhost ~/Desktop]$
Is it because of the 1dimensional thickness file?
If so, how can I apply anova on 1D files?
Thanks