Hello,
I used the following command:
time 3dTrackID -mode PROB \
-netrois /media/larson_buffalo/MRI7/KAward/Conditioning_From_Cluster/K_dti/sub238/sub238_add_rois.nii.gz \
-uncert /media/larson_buffalo/MRI7/KAward/Conditioning_From_Cluster/K_dti/sub238/dmri/DTI/o.UNCERT_UNC+orig \
-dti_in /media/larson_buffalo/MRI7/KAward/Conditioning_From_Cluster/K_dti/sub238/DTI/DT \
-mask /media/larson_buffalo/MRI7/KAward/Conditioning_From_Cluster/K_dti/sub238/dmri.bedpostX/nodif_brain_mask.nii.gz \
-dump_rois AFNI \
-algopt /media/larson_buffalo/MRI7/KAward/Conditioning_From_Cluster/K_dti/Scripts/ALGOPTS_PROB.dat
-prefix /media/larson_buffalo/MRI7/KAward/Conditioning_From_Cluster/K_dti/sub238/dmri/DTI/o.PR \
-overwrite -echo_edu
When I took out the -algopt command out, I did not get any errors. However, it still says: Number of pairwise connections in netw[0] = 0. Should I be using the logic AND?
Also I did end up averaging the b0s using the -proc_dset and it seemed to work out nicely! Thanks again for your help!
Emily
Thanks for your help!
Emily