Hi Paul,
Yes, I am running probabalistic tractography.
I discovered the error.....my rois were badly warped to diffusion space. I fixed that and got all of the necessary files created and it said on the the terminal that a pairwise connection was found.
However, I tried loading in the NET_000_ROI_001_002 and the DT_FA file and ran into the following error:
++ Environment variable = already set to 'SUMA_SUMA_TESSCON_AutoScale'. Value of 'NO' from /home/AD/ebelleau/.sumarc is ignored.
To kill such warnings Set AFNI_ENVIRON_WARNINGS to NO
-- Error SUMA_LoadVolDO (SUMA_volume_render.c:914):
Failed to open /media/larson_buffalo/MRI7/Conditioning_From_Cluster/K_dti/sub238/dmri/DTI/o.PR/NET_000_ROI_001_002+orig.
-- Error SUMA_SetupSVforDOs (SUMA_SVmanip.c:5542):
Nothing to see (check ttv for necessary types)
Error SUMA_Engine: Failed in SUMA_SetupSVforDOs function.
Any thoughts? Perhaps some environment variables are not properly set?
Thanks again!
Emily
