Hi Paul,
Okay so now I am down to one error message. I had some naming convention/directory issues. I don't think that this next error message is a result of these issues.
Error Message:
++ Environment variable = already set to 'SUMA_SUMA_TESSCON_AutoScale'. Value of 'NO' from /home/AD/ebelleau/.sumarc is ignored.
To kill such warnings Set AFNI_ENVIRON_WARNINGS to NO
-- Error SUMA_LoadDsetOntoSO_eng (SUMA_Color.c:10118):
Could not find network_file "o.PR_000.niml.tract" on disk for dset /media/larson_buffalo/MRI7/KAward/Conditioning_From_Cluster/K_dti/sub238/dmri/DTI/o.PR_000.niml.dset
This is the code that I used:
$suma -vol /media/larson_buffalo/MRI7/KAward/Conditioning_From_Cluster/K_dti/sub238/dmri/DTI/o.PR/NET_000_ROI_001_002+orig -vol /media/larson_buffalo/MRI7/KAward/Conditioning_From_Cluster/K_dti/sub238/dmri/DTI/o.PR_000_PAIRMAP+orig -gdset /media/larson_buffalo/MRI7/KAward/Conditioning_From_Cluster/K_dti/sub238/dmri/DTI/o.PR_000.niml.dset -vol /media/larson_buffalo/MRI7/KAward/Conditioning_From_Cluster/K_dti/sub238/DTI/DT_FA+orig
*Am I perhaps not loading the correct pairmap file? When I ran the probabilistic tractorgraphy, it said on ther terminal that ot found a connection.
Thanks again!
Emily
