AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 10, 2015 09:34AM
Hi Dan,
Sorry, I can't seem to find the -align_epi_ext_dset option in the help (http://afni.nimh.nih.gov/pub/dist/doc/program_help/align_epi_anat.py.html). Could you elaborate the command I would use?
I do see the -epi_base option. Currently I'm not aligning the zero sub-brick so I could do that, i.e., -epi_base 0. Would that be the same as what you did?
Thank you!

--ts
Subject Author Posted

align_epi_anat options to skullstrip

tsliu March 06, 2015 11:16AM

Re: align_epi_anat options to skullstrip

Daniel Glen March 06, 2015 12:03PM

Re: align_epi_anat options to skullstrip

tsliu March 08, 2015 04:27PM

Re: align_epi_anat options to skullstrip

Daniel Glen March 08, 2015 06:01PM

Re: align_epi_anat options to skullstrip

tsliu March 09, 2015 05:34PM

Re: align_epi_anat options to skullstrip

Daniel Glen March 09, 2015 06:47PM

Re: align_epi_anat options to skullstrip

tsliu March 10, 2015 09:34AM

Re: align_epi_anat options to skullstrip

Daniel Glen March 10, 2015 12:31PM

Re: align_epi_anat options to skullstrip

tsliu March 10, 2015 05:27PM

Re: align_epi_anat options to skullstrip

Daniel Glen March 10, 2015 06:19PM

Re: align_epi_anat options to skullstrip

tsliu March 11, 2015 02:57PM