AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 01, 2017 10:40AM
Hello,

I am a little confused by the suggestions here, but maybe I am not getting something. My ISSS sequence is 3 volumes followed by 1 silent volume. So I need to zero pad my time series so that after every three volumes, I insert a zero or mean volume. Obviously I will need to pad my regressors accordingly.

1) How can I quickly generate the censor file using AFNI tools? I essentially need 60 sets of:

1
1
1
0

I assume I'd use 1deval or 1d_tool, but I can't figure out how to do this - sorry if this is a simple answer.

2) I am unclear what reordering means in the above posts. If I want to pad my EPI data, then do I need to add 60 volumes of zero or mean data at the end of my EPI and then reorder so that every 4th volume moves from the end to the proper location? Is there no way to directly insert one volume multiple times (like, I create one mean volume and then insert it after every 3 volumes if the EPI)?

I think those two questions will get me going, thanks.
Subject Author Posted

Analysis of ISSS data

eva.yidu August 27, 2015 11:12PM

Re: Analysis of ISSS data

rick reynolds August 31, 2015 11:29AM

Re: Analysis of ISSS data

eva.yidu September 24, 2015 05:19PM

Re: Analysis of ISSS data

Adam Greenberg October 07, 2016 12:41PM

Re: Analysis of ISSS data

Adam Greenberg October 11, 2016 11:38AM

Re: Analysis of ISSS data

dmoracze October 11, 2016 01:46PM

Re: Analysis of ISSS data

rick reynolds October 12, 2016 10:06PM

Re: Analysis of ISSS data

Adam Greenberg October 13, 2016 10:48AM

Re: Analysis of ISSS data

rick reynolds October 13, 2016 12:15PM

Re: Analysis of ISSS data

dmoracze March 01, 2017 10:40AM

Re: Analysis of ISSS data

rick reynolds March 07, 2017 09:45AM

Re: Analysis of ISSS data

dmoracze March 09, 2017 04:22PM