AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
March 07, 2017 09:45AM
1) This works well using modulo arithmetic. Try
something like:

1deval -expr 'bool(mod(t+1,4))' -num 240


2) One method for adding the extra 60 zero volumes
to the 180 volume time series would be to first
create a 181 volume time series by pre-pending
(or appending, whichever) the extra zero volume,
making it time index 0, leaving 1..180 as the real
data.

Then you just need a time series that counts from
1 to 180, but inserts a 0 after every 3 values,
and this can be use for sub-brick selection.

Note that you also need to pad a 1D time series
with zeros in the case of motion parameters and
possibly the enorm time series. Use 1d_tool.py
for that, as is done in this class data example,
AFNI_data6/FT_analysis/s17.proc.FT.rest.11.

Search for the string "zero pad censored TRs",
where 1d_tool.py -censor_fill_parent is applied.

- rick
Subject Author Posted

Analysis of ISSS data

eva.yidu August 27, 2015 11:12PM

Re: Analysis of ISSS data

rick reynolds August 31, 2015 11:29AM

Re: Analysis of ISSS data

eva.yidu September 24, 2015 05:19PM

Re: Analysis of ISSS data

Adam Greenberg October 07, 2016 12:41PM

Re: Analysis of ISSS data

Adam Greenberg October 11, 2016 11:38AM

Re: Analysis of ISSS data

dmoracze October 11, 2016 01:46PM

Re: Analysis of ISSS data

rick reynolds October 12, 2016 10:06PM

Re: Analysis of ISSS data

Adam Greenberg October 13, 2016 10:48AM

Re: Analysis of ISSS data

rick reynolds October 13, 2016 12:15PM

Re: Analysis of ISSS data

dmoracze March 01, 2017 10:40AM

Re: Analysis of ISSS data

rick reynolds March 07, 2017 09:45AM

Re: Analysis of ISSS data

dmoracze March 09, 2017 04:22PM