AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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AjaySK
December 01, 2015 01:29AM
Hi Rick,
Thanks! I definitely would be interested in hearing about if SurftoSurf could be used for this procedure and how it works (is there any paper regarding how it works?). I was planning on taking my MNI template and running it through Mapsiconahedron as well as all native brain meshes such that they have the exact same number of nodes. I just am not sure of the details of how it would take my subject mesh to MNI (rigid, affine, nonlinear, something else???).

You mentioned to warp the subjects brain a reprocess it through freesurfer (essentially i would run freesurfer 1x for native brain and 1x for MNI brain) but I am hoping to avoid running FS twice per subject as there are approx 150 subjects. I wasn't sure if you thought my idea to modify the Suma_Align script (native brain to MNI) with 3dQwarp instead of affine warping would be a possibility if SurftoSurf does not end up working in a nonlinear fashion?
Thanks,
Ajay
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Subject Author Posted

Using own MNI

kaseybrink November 12, 2015 03:55PM

Re: Using own MNI with SUMA

AjaySK November 16, 2015 04:12PM

Re: Using own MNI with SUMA

Peter Molfese November 17, 2015 11:08AM

Re: Using own MNI

rick reynolds November 17, 2015 01:25PM

Re: Using own MNI

AjaySK November 17, 2015 04:20PM

Re: Using own MNI

kaseybrink November 19, 2015 11:29AM

Re: Using own MNI

Peter Molfese November 19, 2015 02:13PM

Re: Using own MNI

AjaySK November 19, 2015 05:03PM

Re: Using own MNI

rick reynolds November 20, 2015 12:43PM

Re: Using own MNI

AjaySK November 25, 2015 04:49PM

Re: Using own MNI

AjaySK November 30, 2015 01:51PM

Re: Using own MNI

rick reynolds November 30, 2015 04:29PM

Re: Using own MNI

Peter Molfese November 30, 2015 04:39PM

Re: Using own MNI

AjaySK December 01, 2015 01:33AM

Re: Using own MNI

Peter Molfese December 01, 2015 07:27AM

Re: Using own MNI

AjaySK December 01, 2015 01:29AM

Re: Using own MNI

rick reynolds December 01, 2015 12:52PM

Re: Using own MNI

AjaySK December 02, 2015 02:51AM

Re: Using own MNI

Peter Molfese December 02, 2015 11:28AM