Dear Rick,
I did not use "afni_proc.py". Following your groups' slide demonstration, I simply wrote and edited the 3dDeconlve script my self, something like below.
3dDeconvolve -input Emotion_S1_TR_shftNSI+tlrc.BRIK -mask Emotion_S1_BrainMask+tlrc. \
-polort A \
-float \
-nobout \
-num_stimts 6 \
-jobs 8 \
-concat '1D: 0 60 120 180 240 300' \
-stim_times 1 ./Onset1_Sub1/Control_times_sub_1.txt 'CSPLIN(0,15,7)' -stim_label 1 Control1 \
-stim_times 2 ./Onset1_Sub1/Anxiety_times_sub_1.txt 'CSPLIN(0,15,7)' -stim_label 2 Anxiety1 \
-stim_times 3 ./Onset1_Sub1/Shock_times_sub_1.txt 'CSPLIN(0,15,7)' -stim_label 3 Shock_Cond1 \
-stim_times 4 ./Onset2_Sub1/Control_times_sub_1.txt 'CSPLIN(0,15,7)' -stim_label 4 Control2 \
-stim_times 5 ./Onset2_Sub1/Anxiety_times_sub_1.txt 'CSPLIN(0,15,7)' -stim_label 5 Anxiety2 \
-stim_times 6 ./Onset2_Sub1/Shock_times_sub_1.txt 'CSPLIN(0,15,7)' -stim_label 6 Shock_Cond2 \
-cbucket ./Emotion_S1_shftNSI_ShapeNOTfixed_betas" \
-x1D ./"Emotion_S1_shftNSI_ShapeNOTfixed.x1D" \
-xsave \
-xjpeg ./"Emotion_S1_shftNSI_ShapeNOTfixed.png" \
-tout -bucket ./"Emotion_S1_shftNSI_ShapeNOTfixed"
I never got any alarm with my script running. Any ideas to find that potential warning? How can I get the file "out.cormat_warn.txt"? How to generate @ss_review_driver?
Thanks,
J
