Hi,
I am presently optimizing a version of the afni_proc.py call for use in my lab. I have a quick question regarding template space.
In a nutshell, I am wondering if it is possible to run through the entire pipeline retaining the original subject's space (all steps, including alignment and regression) rather than Talairach space. Apologies if I missed this in the documentation, but I don't believe I was able to find anything amounting to a flag or option that straightforwardly achieves this outcome.
Thanks so much,
-Zach Reagh
