AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 06, 2016 02:07PM
Hello Afni experts,
I have 2 questions regarding how 3dQwarp works.

The first pertains to the -weight option where we can supply our own weights. What are the units that is expected for weights? Is this a 3d volume with mm shift for each direction with +/- for direction or is this an arbitrary weighting normalized to a scale between 0 and 1 or something else?


The second question is regarding the -iniwarp option. Similar to the first question, what is the format of the input? Is this file with 3 sub-volume file, one for x,y,z? Are the units mm shift for each voxel where +/- values are used to indicate direction of shift?

For both of these, is the input expected in a certain orientation (ie RPI) or does it just have to match the input or base volume?

Thanks,
Ajay
Subject Author Posted

3dQwarp -weight and -iniwarp input format

AjaySK April 06, 2016 02:07PM

Re: 3dQwarp -weight and -iniwarp input format

Bob Cox April 06, 2016 03:55PM

Re: 3dQwarp -weight and -iniwarp input format

AjaySK April 06, 2016 06:52PM

Re: 3dQwarp -weight and -iniwarp input format

Bob Cox April 07, 2016 03:41PM

Re: 3dQwarp -weight and -iniwarp input format

AjaySK April 08, 2016 08:56AM

Re: 3dQwarp -weight and -iniwarp input format

Bob Cox April 11, 2016 08:21PM

Re: 3dQwarp -weight and -iniwarp input format

Daniel Glen April 12, 2016 07:22AM

Re: 3dQwarp -weight and -iniwarp input format

Bob Cox April 13, 2016 12:56PM