Ajay,
> 1) Is there any easy way to get residuals from 3dMVM or would the code need to be modified?
Currently 3dMVM cannot output residuals yet. On the other hand, the residuals from 3dMVM would be associated with each test separately.
> 2) Is there any issues with slow_surf_clustsim.py or has this been updated in the most recent version?
I believe there is no update for slow_surf_clustsim.py yet.
> 3) Is the most recent version of 3dClustSim fixed or is it only fixed in the ClustSim option within 3dttest++
Check out this post: [
afni.nimh.nih.gov]
Gang