Hi Peter,
Just a follow up to the above.
#1 I wrote my own command to generate a script, so I didn't need to use uber_subject.py but I guess the answer would be helpful for others.
#2 I still have the question about preprocessing... which I am assuming the answer is yes, that the surf anatomy and spec needs to be incorporated into my preprocessing script. And therefore, it would have been best if I thought of this when I first started preprocessing. Yes, everything is scripted so I can do it easily.... just Freesurfer takes forever.
I will wait for your response.
