AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 22, 2016 11:06AM
Hello,

I am trying to turn a bunch of .jpegs into a 3D file. It worked yesterday with fewer files - however I did get this warning and the GUI popped up... but it successfully generated the 3D file through the GUI.

[rossisl@nialbn-01878557 JPEG]$ to3d *.jpg -orient SAL
++ to3d: AFNI version=AFNI_16.1.07 (Apr 25 2016) [64-bit]
++ Authored by: RW Cox
++ It is best to use to3d via the Dimon program.
** Can't find file -orient
** Can't find file SAL
++ Counting images: total=546 2D slices
++ Each 2D slice is 2160 X 2560 pixels
++ Image data type = byte
++ Reading images: ..........................................
*+ WARNING: *** ILLEGAL INPUTS (cannot save) ***

Axes orientations are not consistent!
++ Making widgets.....


Today, with the complete set of files, this is what I'm getting and the GUI won't pop up - even if I only input the filename.

[rossisl@nialbn-01878557 newborn_neurons]$ to3d *.jpg -orient SAL
++ to3d: AFNI version=AFNI_16.2.18 (Sep 19 2016) [64-bit]
++ Authored by: RW Cox
++ It is best to use to3d via the Dimon program.
** Can't find file -orient
** Can't find file SAL
++ Counting images: total=2362 2D slices
++ Each 2D slice is 2160 X 2560 pixels
++ Image data type = byte
++ Reading images:
Fatal Signal 11 (SIGSEGV) received
T3D_read_images
to3d:main
Bottom of Debug Stack
** Command line was:
to3d Aged_10000.jpg Aged_10001.jpg Aged_10002.jpg ... -orient SAL
** AFNI version = AFNI_16.2.18 Compile date = Sep 19 2016
** [[Precompiled binary linux_openmp_64: Sep 19 2016]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /home/rossisl/.afni.crashlog
[rossisl@nialbn-01878557 newborn_neurons]$

Do I not have enough memory because there are so many files?

Thanks in advance!
Subject Author Posted

to3d error

sharyn September 22, 2016 11:06AM

Re: to3d error

sharyn September 22, 2016 12:23PM

Re: to3d error

Daniel Glen September 22, 2016 01:04PM

Re: to3d error

rick reynolds September 22, 2016 01:35PM

Re: to3d error

sharyn September 22, 2016 02:25PM

Re: to3d error

rick reynolds September 22, 2016 04:06PM

Re: to3d error

sharyn September 22, 2016 04:48PM

Re: to3d error

rick reynolds September 22, 2016 08:41PM