Hi Rick,
So, I broke them down into about 100 files each so it wouldn't crash but this is what happens. Then 'making widgets' I guess becomes the GUI and after I input the information there (orientation and output file name), it generates the file. But note that my to3d never finds the -orient option (??) don't know how much that matters.
rossisl@nialbn-01878557 newborn_neurons]$ to3d Aged_100* -orient SAR
++ to3d: AFNI version=AFNI_16.2.18 (Sep 19 2016) [64-bit]
++ Authored by: RW Cox
++ It is best to use to3d via the Dimon program.
** Can't find file -orient
** Can't find file SAR
++ Counting images: total=100 2D slices
++ Each 2D slice is 2160 X 2560 pixels
++ Image data type = byte
++ Reading images: .................................
*+ WARNING: *** ILLEGAL INPUTS (cannot save) ***
Axes orientations are not consistent!
++ Making widgets.....
[rossisl@nialbn-01878557 newborn_neurons]$
[rossisl@nialbn-01878557 newborn_neurons]$
[rossisl@nialbn-01878557 newborn_neurons]$
[rossisl@nialbn-01878557 newborn_neurons]$ to3d Aged_101* -orient SAR
++ to3d: AFNI version=AFNI_16.2.18 (Sep 19 2016) [64-bit]
++ Authored by: RW Cox
++ It is best to use to3d via the Dimon program.
** Can't find file -orient
** Can't find file SAR
++ Counting images: total=100 2D slices
++ Each 2D slice is 2160 X 2560 pixels
++ Image data type = byte
++ Reading images: .................................
*+ WARNING: *** ILLEGAL INPUTS (cannot save) ***
Axes orientations are not consistent!
++ Making widgets.....
