AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
December 21, 2016 10:04AM
Peter, it's better to start with a simple model first and see if it works, especially in this case with minimum amount of data.

> We model monkey to account for differences (and to see if there is an outlier); but the
> flip-side if this is that this factor hopefully "soaks up" variance attributable to monkey.

When "monkey" is not directly specified in the model as a fixed- or random-effects factor, it does not mean that the variability among the monkeys is not accounted for. Instead the variability is explained in the residuals. Directly modeling it as a fixed-effects factor requires more model parameters, leading to unstable estimation in the process, and you don't have enough data to play with.

> -ranEff '~1+Monk|Subj'

Just try

-ranEff '~1' \

and you should feel blessed if you get something interesting in the end.

Gang



Edited 1 time(s). Last edit at 12/21/2016 10:08AM by Gang.
Subject Author Posted

3dLME random effects and nesting

PeterK December 15, 2016 01:21PM

Re: 3dLME random effects and nesting

gang December 16, 2016 03:55PM

Re: 3dLME random effects and nesting

PeterK December 19, 2016 11:02AM

Re: 3dLME random effects and nesting

gang December 20, 2016 08:54AM

Re: 3dLME random effects and nesting

PeterK December 20, 2016 02:20PM

Re: 3dLME random effects and nesting

gang December 21, 2016 10:04AM

Re: 3dLME random effects and nesting

PeterK December 22, 2016 10:16AM