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rick reynolds
January 04, 2017 10:10AM
This is the problem: "(I just have 141 .nii files for each subject)".
It has nothing to do with .gz.

You do not have a dataset that is a single run, but have 141
separate volumes. Put them into a single dataset before
running uber_subject.py or afni_proc.py. Specify the TR when
doing this:

3dTcat -TR XXXX -prefix run1 volume*.nii.gz

- rick
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Creating a single .nii.gz from .nii files

heretic133 January 04, 2017 03:15AM

Re: Creating a single .nii.gz from .nii files

rick reynolds January 04, 2017 07:57AM

Re: Creating a single .nii.gz from .nii files

heretic133 January 04, 2017 09:42AM

Re: Creating a single .nii.gz from .nii files

rick reynolds January 04, 2017 10:10AM

Re: Creating a single .nii.gz from .nii files

heretic133 January 04, 2017 10:31AM

Re: Creating a single .nii.gz from .nii files

heretic133 January 04, 2017 11:53AM

Re: Creating a single .nii.gz from .nii files

Daniel Glen January 04, 2017 03:04PM

Re: Creating a single .nii.gz from .nii files

heretic133 January 07, 2017 02:23PM

Re: Creating a single .nii.gz from .nii files

rick reynolds January 07, 2017 05:35PM