History of AFNI updates  

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November 20, 2017 08:24PM
Hi Rick,

You mentioned that I "Currently you have 150s of rest, distributed in 3s
multiples (so 0 or 3 or 6, etc). Is that really how
you want it? Would you prefer a range, maybe 2..10,
say? It looks like the mean ISI should be about 5s,
the way you have set it up. "

For my experiment, I do not have true rest. Instead, I have an baseline 'task' that takes 3-sec to complete. Based on our earlier conversations, I have been coding this as a separate task and not as rest. Thus, I cannot have the baseline 'task' range from 2..10 sec because then people would have too little time (2 sec) or too much time (anything > 3 sec) to do the task.

I am having trouble figuring out what the mean ISI would be because the metrics that are outputted are not setup to have no real 'rest'.
QUESTION: How did you arrive at the ~5sec ISI?

Also, I am noticing another artefact of coding the baseline task as a condition. The best randomization had the baseline condition occurring as the first stimulus in one of the runs. In my case, the baseline condition should create the jitter between my conditions of interest and should not occur at the beginning or end of a run. Note that I already have 12 sec of the baseline task to begin each run (to reach steady state) and 9 sec at the end to catch the end of the HRF. I want the first stimulus in each block to be a condition of interest (labels 1-8), not the baseline condition.
QUESTION: Is there any way to prevent the baseline 'condition' from occurring first or last in a run?

Regards,
Christine
Subject Author Posted

'active' baseline task and make_random_timing.py

Christine Smith October 16, 2017 07:21PM

Re: 'active' baseline task and make_random_timing.py

rick reynolds October 18, 2017 09:28AM

Re: 'active' baseline task and make_random_timing.py

Christine Smith October 18, 2017 05:30PM

Re: 'active' baseline task and make_random_timing.py

Christine Smith October 25, 2017 05:03PM

Re: 'active' baseline task and make_random_timing.py

rick reynolds October 25, 2017 06:29PM

Re: 'active' baseline task and make_random_timing.py

Christine Smith October 26, 2017 03:15PM

Re: 'active' baseline task and make_random_timing.py

rick reynolds November 03, 2017 11:41AM

Re: 'active' baseline task and make_random_timing.py

Christine Smith November 06, 2017 09:27PM

Re: 'active' baseline task and make_random_timing.py

rick reynolds November 09, 2017 10:43AM

Re: 'active' baseline task and make_random_timing.py

Christine Smith November 20, 2017 08:24PM

Re: 'active' baseline task and make_random_timing.py

rick reynolds November 21, 2017 11:25AM

Re: 'active' baseline task and make_random_timing.py

rick reynolds November 22, 2017 08:29AM

Re: 'active' baseline task and make_random_timing.py

Christine Smith November 29, 2017 03:19PM

Re: 'active' baseline task and make_random_timing.py

rick reynolds November 29, 2017 03:46PM